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  5. Dcu_g02996

Dcu_g02996 (MAC3A)


Aliases : MAC3A

Description : E3 ubiquitin protein ligase *(PUB60) & original description: none


Gene families : OG0002806 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002806_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g02996

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00039p00212570 MAC3A,... RNA processing.RNA splicing.spliceosome-associated... 0.04 OrthoFinder output from all 47 species
AT2G33340 MAC3B MOS4-associated complex 3B 0.03 OrthoFinder output from all 47 species
Adi_g088167 MAC3B E3 ubiquitin protein ligase *(PUB60) & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g109115 MAC3A E3 ubiquitin protein ligase *(PUB60) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g13324 MAC3A E3 ubiquitin protein ligase *(PUB60) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.06G040200.1 MAC3A, Ceric.06G040200 E3 ubiquitin protein ligase *(PUB60) & original... 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001501.3 MAC3B Pre-mRNA-processing factor 19 OS=Oryza sativa subsp. japonica 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021493.5 MAC3B Pre-mRNA-processing factor 19 OS=Oryza sativa subsp. japonica 0.01 OrthoFinder output from all 47 species
Cre02.g073650 MAC3B RNA processing.RNA splicing.spliceosome-associated... 0.02 OrthoFinder output from all 47 species
LOC_Os10g32880.1 MAC3A, LOC_Os10g32880 component MAC3 of non-snRNP MOS4-associated complex 0.09 OrthoFinder output from all 47 species
MA_20260g0010 MAC3A component MAC3 of non-snRNP MOS4-associated complex 0.03 OrthoFinder output from all 47 species
Msp_g02452 MAC3B E3 ubiquitin protein ligase *(PUB60) & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g23764 MAC3B E3 ubiquitin protein ligase *(PUB60) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g15915 No alias E3 ubiquitin protein ligase *(PUB60) & original description: none 0.02 OrthoFinder output from all 47 species
Smo437541 MAC3B RNA processing.RNA splicing.spliceosome-associated... 0.06 OrthoFinder output from all 47 species
Solyc09g090660.3.1 MAC3A, Solyc09g090660 component MAC3 of non-snRNP MOS4-associated complex 0.06 OrthoFinder output from all 47 species
Zm00001e004625_P001 MAC3B, Zm00001e004625 component MAC3 of non-snRNP MOS4-associated complex 0.04 OrthoFinder output from all 47 species
Zm00001e012723_P001 MAC3B, Zm00001e012723 component MAC3 of non-snRNP MOS4-associated complex 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
MF GO:0044183 protein folding chaperone IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140662 ATP-dependent protein folding chaperone IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR003613 Ubox_domain 11 53
IPR001680 WD40_repeat 483 513
IPR001680 WD40_repeat 257 293
IPR001680 WD40_repeat 302 339
IPR001680 WD40_repeat 389 424
IPR013915 Pre-mRNA_splic_Prp19 66 131
No external refs found!