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  5. Spa_g56238

Spa_g56238 (HCF101)


Aliases : HCF101

Description : not classified & original description: none


Gene families : OG0004803 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004803_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g56238

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00142p00060790 HCF101,... Coenzyme metabolism.iron-sulfur cluster assembly... 0.03 OrthoFinder output from all 47 species
Adi_g075712 HCF101 scaffold protein HCF101 of plastidial SUF system... 0.03 OrthoFinder output from all 47 species
Aev_g11015 HCF101 scaffold protein HCF101 of plastidial SUF system... 0.04 OrthoFinder output from all 47 species
Ala_g13945 HCF101 scaffold protein HCF101 of plastidial SUF system... 0.05 OrthoFinder output from all 47 species
Als_g18429 HCF101 scaffold protein HCF101 of plastidial SUF system... 0.06 OrthoFinder output from all 47 species
Als_g19035 HCF101 protein involved in PS-I assembly *(HCF101) & original... 0.04 OrthoFinder output from all 47 species
Als_g32492 HCF101 scaffold protein HCF101 of plastidial SUF system... 0.05 OrthoFinder output from all 47 species
Aob_g14161 HCF101 scaffold protein HCF101 of plastidial SUF system... 0.03 OrthoFinder output from all 47 species
Aop_g25561 HCF101 scaffold protein HCF101 of plastidial SUF system... 0.03 OrthoFinder output from all 47 species
Azfi_s0032.g024765 HCF101 scaffold protein HCF101 of plastidial SUF system... 0.03 OrthoFinder output from all 47 species
Cre01.g045902 HCF101 Coenzyme metabolism.iron-sulfur cluster assembly... 0.03 OrthoFinder output from all 47 species
Dac_g13357 HCF101 scaffold protein HCF101 of plastidial SUF system... 0.05 OrthoFinder output from all 47 species
Dde_g50845 HCF101 scaffold protein HCF101 of plastidial SUF system... 0.02 OrthoFinder output from all 47 species
Gb_01824 HCF101 Fe-S cluster assembly factor HCF101, chloroplastic... 0.04 OrthoFinder output from all 47 species
Gb_01825 HCF101 Fe-S cluster assembly factor HCF101, chloroplastic... 0.04 OrthoFinder output from all 47 species
LOC_Os01g52170.1 HCF101, LOC_Os01g52170 HCF101 protein involved in PS-I assembly. scaffold... 0.03 OrthoFinder output from all 47 species
Len_g45512 HCF101 scaffold protein HCF101 of plastidial SUF system... 0.06 OrthoFinder output from all 47 species
Lfl_g12880 HCF101 scaffold protein HCF101 of plastidial SUF system... 0.08 OrthoFinder output from all 47 species
Msp_g12150 HCF101 scaffold protein HCF101 of plastidial SUF system... 0.06 OrthoFinder output from all 47 species
Pnu_g25839 HCF101 scaffold protein HCF101 of plastidial SUF system... 0.02 OrthoFinder output from all 47 species
Pp3c19_20070V3.1 HCF101, Pp3c19_20070 ATP binding 0.01 OrthoFinder output from all 47 species
Ppi_g57975 HCF101 scaffold protein HCF101 of plastidial SUF system... 0.04 OrthoFinder output from all 47 species
Sam_g25149 No alias scaffold protein HCF101 of plastidial SUF system... 0.08 OrthoFinder output from all 47 species
Smo91144 HCF101 Coenzyme metabolism.iron-sulfur cluster assembly... 0.02 OrthoFinder output from all 47 species
Tin_g02764 HCF101 scaffold protein HCF101 of plastidial SUF system... 0.05 OrthoFinder output from all 47 species
Zm00001e008773_P004 HCF101, Zm00001e008773 HCF101 protein involved in PS-I assembly. scaffold... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004832 valine-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006438 valyl-tRNA aminoacylation IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
MF GO:0044183 protein folding chaperone IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140662 ATP-dependent protein folding chaperone IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR010376 GBBH-like_N 16 65
No external refs found!