1. Home
  2. Species
  3. Stenochlaena palustris
  4. Sequence
  5. Spa_g54394

Spa_g54394


Description : component *(uS3) of small ribosomal-subunit (SSU) proteome & original description: none


Gene families : OG0001769 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001769_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g54394
Cluster HCCA: Cluster_169

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00030p00157370 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 OrthoFinder output from all 47 species
Adi_g083363 No alias component *(uS3) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Als_g11830 No alias component *(uS3) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Aop_g11605 No alias component *(uS3) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Aspi01Gene29921.t1 Aspi01Gene29921 component *(uS3) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Cba_g07331 No alias component *(uS3) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Dac_g21379 No alias component *(uS3) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Gb_26539 No alias component RPS3 of SSU proteome 0.03 OrthoFinder output from all 47 species
LOC_Os03g38000.1 LOC_Os03g38000 component RPS3 of SSU proteome 0.03 OrthoFinder output from all 47 species
LOC_Os07g41750.1 LOC_Os07g41750 component RPS3 of SSU proteome 0.02 OrthoFinder output from all 47 species
MA_10436283g0010 No alias component RPS3 of SSU proteome 0.02 OrthoFinder output from all 47 species
Mp1g16730.1 No alias component RPS3 of SSU proteome 0.05 OrthoFinder output from all 47 species
Nbi_g06065 No alias component *(uS3) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Pir_g02460 No alias component *(uS3) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Sam_g27040 No alias component *(uS3) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Sam_g27041 No alias component *(uS3) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Solyc08g061843.1.1 Solyc08g061843 component RPS3 of SSU proteome 0.02 OrthoFinder output from all 47 species
Tin_g04971 No alias component *(uS3) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004827 proline-tRNA ligase activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006433 prolyl-tRNA aminoacylation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001351 Ribosomal_S3_C 56 138
IPR004044 KH_dom_type_2 1 43
No external refs found!