1. Home
  2. Species
  3. Stenochlaena palustris
  4. Sequence
  5. Spa_g47199

Spa_g47199 (RAN3, ATRAN3)


Aliases : RAN3, ATRAN3

Description : GTPase *(Ran) & original description: none


Gene families : OG0000916 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000916_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g47199
Cluster HCCA: Cluster_47

Target Alias Description ECC score Gene Family Method Actions
Azfi_s0094.g043417 RAN2 GTPase *(Ran) & original description: CDS=291-938 0.04 OrthoFinder output from all 47 species
Azfi_s0147.g053043 RAN2 GTPase *(Ran) & original description: CDS=1-873 0.05 OrthoFinder output from all 47 species
Azfi_s0548.g076431 RAN2 GTPase *(Ran) & original description: CDS=1-873 0.05 OrthoFinder output from all 47 species
Cba_g09240 RAN2 GTPase *(Ran) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.10G019400.1 RAN3, ATRAN3,... GTPase *(Ran) & original description: pacid=50612012... 0.04 OrthoFinder output from all 47 species
Ceric.35G063800.1 RAN3, ATRAN3,... GTPase *(Ran) & original description: pacid=50581751... 0.08 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000194.22 RAN2 Protein translocation.nucleus.nucleocytoplasmic... 0.02 OrthoFinder output from all 47 species
Dac_g44710 RAN3, ATRAN3 GTPase *(Ran) & original description: none 0.03 OrthoFinder output from all 47 species
MA_10427158g0010 RAN2 Ran GTPase 0.02 OrthoFinder output from all 47 species
MA_28412g0010 RAN2 Ran GTPase 0.03 OrthoFinder output from all 47 species
Msp_g02691 RAN3, ATRAN3 GTPase *(Ran) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g104700.4.1 RAN2, Solyc01g104700 Ran GTPase 0.02 OrthoFinder output from all 47 species
Solyc05g023800.3.1 RAN2, Solyc05g023800 Ran GTPase 0.03 OrthoFinder output from all 47 species
Tin_g02374 RAN3, ATRAN3 GTPase *(Ran) & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005839 proteasome core complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0031267 small GTPase binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
MF GO:0051020 GTPase binding IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR001806 Small_GTPase 8 164
No external refs found!