Spa_g37875

Description : component *(uS6c) of small plastid ribosomal-subunit proteome & original description: none

Gene families : OG0003772 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003772_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Spa_g37875

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00021p00220150	evm_27.TU.AmTr_v1...	Protein biosynthesis.organelle translation...	0.02	OrthoFinder output from all 47 species
AT1G64510	No alias	Translation elongation factor EF1B/ribosomal protein S6...	0.05	OrthoFinder output from all 47 species
Aev_g04389	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Ala_g02976	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Als_g05365	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Als_g19098	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Aob_g08781	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Aop_g30964	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Azfi_s0051.g031290	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Cba_g26011	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Ceric.10G083400.1	Ceric.10G083400	component *(uS6c) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Ceric.32G022300.1	Ceric.32G022300	component *(uS6c) of small plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Cre12.g520600	No alias	Protein biosynthesis.organelle translation...	0.03	OrthoFinder output from all 47 species
Dac_g02644	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.09	OrthoFinder output from all 47 species
Dcu_g40728	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Dde_g06910	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.08	OrthoFinder output from all 47 species
Ehy_g04427	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
GSVIVT01019593001	No alias	Protein biosynthesis.organelle translation...	0.04	OrthoFinder output from all 47 species
LOC_Os03g62630.1	LOC_Os03g62630	component psRPS6 of small ribosomal subunit proteome	0.03	OrthoFinder output from all 47 species
Len_g38836	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
MA_10429326g0010	No alias	component psRPS6 of small ribosomal subunit proteome	0.04	OrthoFinder output from all 47 species
Mp4g07210.1	No alias	component psRPS6 of small ribosomal subunit proteome	0.05	OrthoFinder output from all 47 species
Msp_g00928	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Nbi_g25871	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.1	OrthoFinder output from all 47 species
Pir_g00320	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Pnu_g10315	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Ppi_g06171	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Sacu_v1.1_s0027.g009778	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.08	OrthoFinder output from all 47 species
Sam_g19470	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Smo58368	No alias	Protein biosynthesis.organelle translation...	0.03	OrthoFinder output from all 47 species
Solyc08g082690.2.1	Solyc08g082690	component psRPS6 of small ribosomal subunit proteome	0.04	OrthoFinder output from all 47 species
Tin_g06363	No alias	component *(uS6c) of small plastid ribosomal-subunit...	0.08	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019843	rRNA binding	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000049	tRNA binding	IEP	HCCA
CC	GO:0000786	nucleosome	IEP	HCCA
MF	GO:0004601	peroxidase activity	IEP	HCCA
MF	GO:0005216	monoatomic ion channel activity	IEP	HCCA
MF	GO:0005261	monoatomic cation channel activity	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006163	purine nucleotide metabolic process	IEP	HCCA
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006325	chromatin organization	IEP	HCCA
BP	GO:0006334	nucleosome assembly	IEP	HCCA
BP	GO:0006338	chromatin remodeling	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006753	nucleoside phosphate metabolic process	IEP	HCCA
BP	GO:0006754	ATP biosynthetic process	IEP	HCCA
BP	GO:0006793	phosphorus metabolic process	IEP	HCCA
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
BP	GO:0009117	nucleotide metabolic process	IEP	HCCA
BP	GO:0009141	nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009142	nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009144	purine nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009145	purine nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009150	purine ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009152	purine ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009165	nucleotide biosynthetic process	IEP	HCCA
BP	GO:0009199	ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009201	ribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009205	purine ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009206	purine ribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009259	ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009260	ribonucleotide biosynthetic process	IEP	HCCA
CC	GO:0009521	photosystem	IEP	HCCA
CC	GO:0009523	photosystem II	IEP	HCCA
BP	GO:0010206	photosystem II repair	IEP	HCCA
BP	GO:0010207	photosystem II assembly	IEP	HCCA
MF	GO:0015078	proton transmembrane transporter activity	IEP	HCCA
MF	GO:0015252	proton channel activity	IEP	HCCA
MF	GO:0015267	channel activity	IEP	HCCA
BP	GO:0015979	photosynthesis	IEP	HCCA
BP	GO:0015986	proton motive force-driven ATP synthesis	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
MF	GO:0016209	antioxidant activity	IEP	HCCA
MF	GO:0016684	oxidoreductase activity, acting on peroxide as acceptor	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
BP	GO:0019693	ribose phosphate metabolic process	IEP	HCCA
BP	GO:0022607	cellular component assembly	IEP	HCCA
MF	GO:0022803	passive transmembrane transporter activity	IEP	HCCA
BP	GO:0030091	protein repair	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
CC	GO:0032993	protein-DNA complex	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
BP	GO:0034728	nucleosome organization	IEP	HCCA
BP	GO:0043933	protein-containing complex organization	IEP	HCCA
CC	GO:0044815	DNA packaging complex	IEP	HCCA
BP	GO:0046034	ATP metabolic process	IEP	HCCA
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
MF	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
MF	GO:0051920	peroxiredoxin activity	IEP	HCCA
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	HCCA
BP	GO:0065003	protein-containing complex assembly	IEP	HCCA
BP	GO:0065004	protein-DNA complex assembly	IEP	HCCA
BP	GO:0071824	protein-DNA complex subunit organization	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
BP	GO:0072521	purine-containing compound metabolic process	IEP	HCCA
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0090407	organophosphate biosynthetic process	IEP	HCCA
BP	GO:0110102	ribulose bisphosphate carboxylase complex assembly	IEP	HCCA
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	HCCA
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000529	Ribosomal_S6	112	209

External Links

No external refs found!

Spa_g37875

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation