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  5. Spa_g26797

Spa_g26797 (RNR1, ATMTRNASEII, EMB2730)


Aliases : RNR1, ATMTRNASEII, EMB2730

Description : exoribonuclease *(RNase R) & original description: none


Gene families : OG0003116 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003116_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g26797
Cluster HCCA: Cluster_63

Target Alias Description ECC score Gene Family Method Actions
Aop_g16173 RNR1,... exoribonuclease *(RNase R) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0076.g037820 RNR1,... exoribonuclease *(RNase R) & original description: CDS=121-2559 0.05 OrthoFinder output from all 47 species
Cba_g76589 RNR1,... exoribonuclease *(RNase R) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.16G035800.1 RNR1,... exoribonuclease *(RNase R) & original description:... 0.04 OrthoFinder output from all 47 species
GSVIVT01034161001 RNR1,... RNA processing.organelle machineries.ribonuclease... 0.03 OrthoFinder output from all 47 species
Gb_33852 RNR1,... exoribonuclease (RNase R) 0.02 OrthoFinder output from all 47 species
Gb_33853 RNR1,... exoribonuclease (RNase R) 0.03 OrthoFinder output from all 47 species
LOC_Os01g62440.1 RNR1,... exoribonuclease (RNase R) 0.02 OrthoFinder output from all 47 species
Lfl_g02157 RNR1,... exoribonuclease *(RNase R) & original description: none 0.02 OrthoFinder output from all 47 species
Mp3g07060.1 RNR1,... exoribonuclease (RNase R) 0.02 OrthoFinder output from all 47 species
Nbi_g16036 RNR1,... exoribonuclease *(RNase R) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g09686 RNR1,... exoribonuclease *(RNase R) & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g09786 RNR1,... exoribonuclease *(RNase R) & original description: none 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0038.g011986 RNR1,... exoribonuclease *(RNase R) & original description: CDS=1-2217 0.03 OrthoFinder output from all 47 species
Solyc09g010870.4.1 RNR1,... exoribonuclease (RNase R) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0004540 ribonuclease activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003747 translation release factor activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006415 translational termination IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008079 translation termination factor activity IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016854 racemase and epimerase activity IEP HCCA
MF GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0022411 cellular component disassembly IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0032984 protein-containing complex disassembly IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001900 RNase_II/R 377 673
No external refs found!