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  5. Spa_g21627

Spa_g21627 (ATMYC2, MYC2,...)


Aliases : ATMYC2, MYC2, RD22BP1, JIN1, ZBF1, JAI1

Description : bHLH-type transcription factor & original description: none


Gene families : OG0000245 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000245_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g21627

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00225810 ATMYC2, MYC2,... RNA biosynthesis.transcriptional activation.bHLH... 0.04 OrthoFinder output from all 47 species
AMTR_s00021p00226670 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.bHLH... 0.02 OrthoFinder output from all 47 species
AMTR_s00099p00127980 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.bHLH... 0.03 OrthoFinder output from all 47 species
AT4G17880 No alias Basic helix-loop-helix (bHLH) DNA-binding family protein 0.03 OrthoFinder output from all 47 species
Adi_g099729 NIG1, ATNIG1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g14626 ATMYC2, MYC2,... bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g22120 ATMYC2, MYC2,... bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene05305.t1 ATMYC2, MYC2,... bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene07773.t1 ATMYC2, MYC2,... bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g60923 ATMYC2, MYC2,... bHLH-type transcription factor & original description: none 0.07 OrthoFinder output from all 47 species
Ceric.13G040400.1 ATMYC2, MYC2,... bHLH-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.39G007700.1 ATMYC2, MYC2,... bHLH-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Dde_g16649 ATMYC2, MYC2,... bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g07082 ATMYC2, MYC2,... bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01013156001 ATMYC2, MYC2,... RNA biosynthesis.transcriptional activation.bHLH... 0.03 OrthoFinder output from all 47 species
GSVIVT01027162001 No alias Transcription factor bHLH13 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_36294 No alias transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Lfl_g04153 ATMYC2, MYC2,... bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06164 ATMYC2, MYC2,... bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
MA_10435905g0020 ATMYC2, MYC2,... transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
MA_4076g0010 No alias transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
MpVg00340.1 ATMYC2, MYC2,... No annotation 0.03 OrthoFinder output from all 47 species
Pir_g42582 ATMYC2, MYC2,... bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g02577 No alias bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g02335 No alias bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g08808 No alias bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0032.g010825 No alias bHLH-type transcription factor & original description: CDS=1-2244 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0045.g013150 ATMYC2, MYC2,... bHLH-type transcription factor & original description: CDS=1-2487 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0073.g017167 No alias bHLH-type transcription factor & original description: CDS=1-1854 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0227.g026359 ATMYC2, MYC2,... bHLH-type transcription factor & original description: CDS=1-2571 0.03 OrthoFinder output from all 47 species
Smo445428 No alias No description available 0.03 OrthoFinder output from all 47 species
Solyc01g096370.4.1 Solyc01g096370 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Solyc08g008600.3.1 Solyc08g008600 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Solyc08g076930.1.1 ATMYC2, MYC2,... transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
Spa_g52382 ATMYC2, MYC2,... bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e002421_P001 ATMYC2, MYC2,... transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016832 aldehyde-lyase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
InterPro domains Description Start Stop
IPR011598 bHLH_dom 477 523
IPR025610 MYC/MYB_N 52 235
No external refs found!