Spa_g18433


Description : not classified & original description: none


Gene families : OG0000563 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000563_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g18433

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00103p00136100 evm_27.TU.AmTr_v1... No description available 0.02 OrthoFinder output from all 47 species
Adi_g014576 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05626 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g06086 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g34174 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g05131 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0410.g068508 No alias not classified & original description: CDS=242-1558 0.02 OrthoFinder output from all 47 species
Cre04.g219950 No alias No description available 0.01 OrthoFinder output from all 47 species
Cre17.g741850 No alias No description available 0.07 OrthoFinder output from all 47 species
Gb_22631 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Len_g06242 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g07551 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g02951 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10520g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Msp_g05815 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g25324 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g05596 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g08768 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63363 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g39142 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g27795 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 58 122
IPR000504 RRM_dom 180 247
No external refs found!