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  5. Spa_g17563

Spa_g17563 (CESA6, PRC1, IXR2, E112)


Aliases : CESA6, PRC1, IXR2, E112

Description : not classified & original description: none


Gene families : OG0003485 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003485_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g17563

Target Alias Description ECC score Gene Family Method Actions
Adi_g084101 CESA6, PRC1, IXR2, E112 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g084102 CESA6, PRC1, IXR2, E112 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g086873 CESA6, PRC1, IXR2, E112 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g096899 CESA6, PRC1, IXR2, E112 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g42653 CESA6, PRC1, IXR2, E112 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g49552 ATH-A, CESA2, ATCESA2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g63205 CESA6, PRC1, IXR2, E112 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g63206 CESA6, PRC1, IXR2, E112 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g06329 CESA6, PRC1, IXR2, E112 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g21506 AtCESA1, RSW1, CESA1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g14462 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g38394 ATH-A, CESA2, ATCESA2 not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004813 alanine-tRNA ligase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006419 alanyl-tRNA aminoacylation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR027934 CES_Znf_RING 40 116
No external refs found!