Spa_g17234 (EDD, EDD1)


Aliases : EDD, EDD1

Description : glycine-tRNA ligase & original description: none


Gene families : OG0005277 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005277_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g17234
Cluster HCCA: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00111p00138070 EDD, EDD1,... Protein biosynthesis.aminoacyl-tRNA synthetase... 0.02 OrthoFinder output from all 47 species
Adi_g015460 EDD, EDD1 glycine-tRNA ligase & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g02635 EDD, EDD1 glycine-tRNA ligase & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g13775 EDD, EDD1 glycine-tRNA ligase & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s0472.g072933 EDD, EDD1 glycine-tRNA ligase & original description: CDS=154-3516 0.03 OrthoFinder output from all 47 species
Cba_g05311 EDD, EDD1 glycine-tRNA ligase & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.32G004800.1 EDD, EDD1,... glycine-tRNA ligase & original description:... 0.04 OrthoFinder output from all 47 species
Dcu_g01951 EDD, EDD1 glycine-tRNA ligase & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g21151 EDD, EDD1 glycine-tRNA ligase & original description: none 0.04 OrthoFinder output from all 47 species
LOC_Os06g01400.1 EDD, EDD1, LOC_Os06g01400 glycine-tRNA ligase 0.05 OrthoFinder output from all 47 species
Len_g07793 EDD, EDD1 glycine-tRNA ligase & original description: none 0.03 OrthoFinder output from all 47 species
Mp8g04520.1 EDD, EDD1 glycine-tRNA ligase 0.02 OrthoFinder output from all 47 species
Msp_g13173 EDD, EDD1 glycine-tRNA ligase & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g18283 EDD, EDD1 glycine-tRNA ligase & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g08928 EDD, EDD1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g28161 EDD, EDD1 glycine-tRNA ligase & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g49402 EDD, EDD1 glycine-tRNA ligase & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEA Interproscan
MF GO:0004820 glycine-tRNA ligase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0005737 cytoplasm IEA Interproscan
BP GO:0006426 glycyl-tRNA aminoacylation IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0030246 carbohydrate binding IEP HCCA
MF GO:0044183 protein folding chaperone IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
MF GO:0140662 ATP-dependent protein folding chaperone IEP HCCA
InterPro domains Description Start Stop
IPR015944 Gly-tRNA-synth_bsu 433 979
IPR002310 Gly-tRNA_ligase_asu 121 398
No external refs found!