Spa_g11042 (emb2394)

Aliases : emb2394

Description : component *(uL6c) of large plastid ribosomal-subunit proteome & original description: none

Gene families : OG0003589 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003589_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Spa_g11042
Cluster	HCCA: Cluster_90

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00062p00057610	emb2394,...	Protein biosynthesis.organelle translation...	0.04	OrthoFinder output from all 47 species
AT1G05190	emb2394	Ribosomal protein L6 family	0.15	OrthoFinder output from all 47 species
Adi_g085705	emb2394	component *(uL6c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Aev_g41502	emb2394	component *(uL6c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Ala_g09001	emb2394	component *(uL6c) of large plastid ribosomal-subunit...	0.09	OrthoFinder output from all 47 species
Als_g21971	emb2394	component *(uL6c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Aob_g07004	emb2394	component *(uL6c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Aop_g01557	emb2394	component *(uL6c) of large plastid ribosomal-subunit...	0.13	OrthoFinder output from all 47 species
Aspi01Gene71433.t1	emb2394, Aspi01Gene71433	component *(uL6c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Azfi_s0387.g067570	emb2394	component *(uL6c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Azfi_s0454.g071297	emb2394	component *(uL6c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Cba_g11098	emb2394	component *(uL6c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Cba_g20392	emb2394	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Cba_g66463	emb2394	component *(uL6c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Ceric.25G034500.1	emb2394, Ceric.25G034500	component *(uL6c) of large plastid ribosomal-subunit...	0.13	OrthoFinder output from all 47 species
Cre09.g415950	emb2394	Protein biosynthesis.organelle translation...	0.11	OrthoFinder output from all 47 species
Dac_g02024	emb2394	component *(uL6c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Dcu_g12981	emb2394	component *(uL6c) of large plastid ribosomal-subunit...	0.16	OrthoFinder output from all 47 species
Ehy_g05438	emb2394	component *(uL6c) of large plastid ribosomal-subunit...	0.1	OrthoFinder output from all 47 species
GSVIVT01030599001	emb2394	Protein biosynthesis.organelle translation...	0.13	OrthoFinder output from all 47 species
Gb_27916	emb2394	component psRPL6 of large ribosomal subunit proteome	0.11	OrthoFinder output from all 47 species
LOC_Os03g24020.1	emb2394, LOC_Os03g24020	component psRPL6 of large ribosomal subunit proteome	0.18	OrthoFinder output from all 47 species
LOC_Os03g54040.1	emb2394, LOC_Os03g54040	component psRPL6 of large ribosomal subunit proteome	0.13	OrthoFinder output from all 47 species
Len_g08412	emb2394	component *(uL6c) of large plastid ribosomal-subunit...	0.13	OrthoFinder output from all 47 species
Lfl_g00829	emb2394	component *(uL6c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
MA_54628g0010	emb2394	component psRPL6 of large ribosomal subunit proteome	0.08	OrthoFinder output from all 47 species
MA_65574g0010	emb2394	50S ribosomal protein L6, chloroplastic OS=Spinacia...	0.03	OrthoFinder output from all 47 species
Mp1g03630.1	emb2394	component psRPL6 of large ribosomal subunit proteome	0.18	OrthoFinder output from all 47 species
Msp_g08305	emb2394	component *(uL6c) of large plastid ribosomal-subunit...	0.14	OrthoFinder output from all 47 species
Nbi_g02779	emb2394	component *(uL6c) of large plastid ribosomal-subunit...	0.15	OrthoFinder output from all 47 species
Ore_g05671	emb2394	component *(uL6c) of large plastid ribosomal-subunit...	0.1	OrthoFinder output from all 47 species
Ore_g34962	emb2394	component *(uL6c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Pir_g14367	emb2394	component *(uL6c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Pir_g55752	emb2394	component *(uL6c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Pnu_g10916	emb2394	component *(uL6c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Ppi_g31709	emb2394	component *(uL6c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0038.g011918	emb2394	component *(uL6c) of large plastid ribosomal-subunit...	0.12	OrthoFinder output from all 47 species
Sam_g15102	No alias	component *(uL6c) of large plastid ribosomal-subunit...	0.14	OrthoFinder output from all 47 species
Solyc12g100160.3.1	emb2394, Solyc12g100160	component psRPL6 of large ribosomal subunit proteome	0.1	OrthoFinder output from all 47 species
Zm00001e001699_P002	emb2394, Zm00001e001699	component psRPL6 of large ribosomal subunit proteome	0.14	OrthoFinder output from all 47 species
Zm00001e038182_P002	emb2394, Zm00001e038182	component psRPL6 of large ribosomal subunit proteome	0.14	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019843	rRNA binding	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000413	protein peptidyl-prolyl isomerization	IEP	HCCA
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	HCCA
MF	GO:0005216	monoatomic ion channel activity	IEP	HCCA
MF	GO:0005261	monoatomic cation channel activity	IEP	HCCA
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006754	ATP biosynthetic process	IEP	HCCA
MF	GO:0008519	ammonium transmembrane transporter activity	IEP	HCCA
BP	GO:0009142	nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009145	purine nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009152	purine ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009165	nucleotide biosynthetic process	IEP	HCCA
BP	GO:0009201	ribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009206	purine ribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009260	ribonucleotide biosynthetic process	IEP	HCCA
CC	GO:0009521	photosystem	IEP	HCCA
CC	GO:0009523	photosystem II	IEP	HCCA
BP	GO:0010206	photosystem II repair	IEP	HCCA
BP	GO:0010207	photosystem II assembly	IEP	HCCA
MF	GO:0015252	proton channel activity	IEP	HCCA
MF	GO:0015267	channel activity	IEP	HCCA
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	IEP	HCCA
BP	GO:0015986	proton motive force-driven ATP synthesis	IEP	HCCA
MF	GO:0016853	isomerase activity	IEP	HCCA
MF	GO:0016859	cis-trans isomerase activity	IEP	HCCA
BP	GO:0018193	peptidyl-amino acid modification	IEP	HCCA
BP	GO:0018208	peptidyl-proline modification	IEP	HCCA
MF	GO:0022803	passive transmembrane transporter activity	IEP	HCCA
MF	GO:0022890	inorganic cation transmembrane transporter activity	IEP	HCCA
BP	GO:0030091	protein repair	IEP	HCCA
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	HCCA
MF	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism	IEP	HCCA
BP	GO:0072488	ammonium transmembrane transport	IEP	HCCA
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	HCCA
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	HCCA
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR020040	Ribosomal_L6_a/b-dom	140	214
IPR020040	Ribosomal_L6_a/b-dom	62	132

External Links

No external refs found!

Spa_g11042 (emb2394)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation