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Aliases : LDL3
Description : histone demethylase *(KDM1d) & original description: none
Gene families : OG0003426 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003426_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Spa_g10310 | |
| Cluster | HCCA: Cluster_84 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT4G16310 | LDL3 | LSD1-like 3 | 0.13 | OrthoFinder output from all 47 species | |
| Adi_g011994 | LDL3 | histone demethylase *(KDM1d) & original description: none | 0.07 | OrthoFinder output from all 47 species | |
| Aev_g06185 | LDL3 | histone demethylase *(KDM1d) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ala_g11027 | LDL3 | histone demethylase *(KDM1d) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Als_g22303 | LDL3 | histone demethylase *(KDM1d) & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Aob_g13453 | LDL3 | histone demethylase *(KDM1d) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g27045 | LDL3 | histone demethylase *(KDM1d) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aspi01Gene46596.t1 | LDL3, Aspi01Gene46596 | histone demethylase *(KDM1d) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene46596.t2 | LDL3, Aspi01Gene46596 | histone demethylase *(KDM1d) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene66928.t1 | LDL3, Aspi01Gene66928 | histone demethylase *(KDM1d) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0054.g033788 | LDL3 | histone demethylase *(KDM1d) & original description: CDS=1-6162 | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g14216 | LDL3 | histone demethylase *(KDM1d) & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Cba_g23834 | LDL3 | histone demethylase *(KDM1d) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.04G013700.1 | LDL3, Ceric.04G013700 | histone demethylase *(KDM1d) & original description:... | 0.1 | OrthoFinder output from all 47 species | |
| Ceric.12G094400.1 | LDL3, Ceric.12G094400 | histone demethylase *(KDM1d) & original description:... | 0.07 | OrthoFinder output from all 47 species | |
| Dac_g07791 | LDL3 | histone demethylase *(KDM1d) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Dcu_g10965 | LDL3 | histone demethylase *(KDM1d) & original description: none | 0.07 | OrthoFinder output from all 47 species | |
| Dcu_g10966 | LDL3 | histone demethylase *(KDM1d) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01009833001 | LDL3 | Lysine-specific histone demethylase 1 homolog 3... | 0.09 | OrthoFinder output from all 47 species | |
| GSVIVT01009834001 | LDL3 | Lysine-specific histone demethylase 1 homolog 3... | 0.09 | OrthoFinder output from all 47 species | |
| Gb_40614 | LDL3 | lysine-specific demethylase (LDL3) | 0.05 | OrthoFinder output from all 47 species | |
| LOC_Os10g38850.1 | LDL3, LOC_Os10g38850 | lysine-specific demethylase (LDL3) | 0.04 | OrthoFinder output from all 47 species | |
| Len_g18074 | LDL3 | histone demethylase *(KDM1d) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Lfl_g04294 | LDL3 | histone demethylase *(KDM1d) & original description: none | 0.07 | OrthoFinder output from all 47 species | |
| MA_120420g0010 | No alias | no hits & (original description: none) | 0.05 | OrthoFinder output from all 47 species | |
| MA_120420g0020 | LDL3 | lysine-specific demethylase (LDL3) | 0.1 | OrthoFinder output from all 47 species | |
| Msp_g38960 | LDL3 | histone demethylase *(KDM1d) & original description: none | 0.1 | OrthoFinder output from all 47 species | |
| Nbi_g08319 | LDL3 | histone demethylase *(KDM1d) & original description: none | 0.07 | OrthoFinder output from all 47 species | |
| Nbi_g40775 | LDL3 | histone demethylase *(KDM1d) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g28867 | LDL3 | histone demethylase *(KDM1d) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Pir_g11421 | LDL3 | histone demethylase *(KDM1d) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ppi_g02424 | LDL3 | histone demethylase *(KDM1d) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ppi_g14951 | LDL3 | histone demethylase *(KDM1d) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Sam_g36106 | No alias | histone demethylase *(KDM1d) & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Smo405878 | LDL3 | Chromatin organisation.histone modifications.histone... | 0.05 | OrthoFinder output from all 47 species | |
| Solyc04g081100.3.1 | LDL3, Solyc04g081100 | lysine-specific demethylase (LDL3) | 0.07 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000166 | nucleotide binding | IEP | HCCA |
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003712 | transcription coregulator activity | IEP | HCCA |
| MF | GO:0003824 | catalytic activity | IEP | HCCA |
| MF | GO:0004402 | histone acetyltransferase activity | IEP | HCCA |
| MF | GO:0004594 | pantothenate kinase activity | IEP | HCCA |
| MF | GO:0005524 | ATP binding | IEP | HCCA |
| BP | GO:0006164 | purine nucleotide biosynthetic process | IEP | HCCA |
| BP | GO:0006355 | regulation of DNA-templated transcription | IEP | HCCA |
| BP | GO:0006357 | regulation of transcription by RNA polymerase II | IEP | HCCA |
| BP | GO:0006473 | protein acetylation | IEP | HCCA |
| BP | GO:0006475 | internal protein amino acid acetylation | IEP | HCCA |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
| MF | GO:0008080 | N-acetyltransferase activity | IEP | HCCA |
| BP | GO:0008150 | biological_process | IEP | HCCA |
| BP | GO:0008152 | metabolic process | IEP | HCCA |
| BP | GO:0009150 | purine ribonucleotide metabolic process | IEP | HCCA |
| BP | GO:0009152 | purine ribonucleotide biosynthetic process | IEP | HCCA |
| BP | GO:0009165 | nucleotide biosynthetic process | IEP | HCCA |
| BP | GO:0009259 | ribonucleotide metabolic process | IEP | HCCA |
| BP | GO:0009260 | ribonucleotide biosynthetic process | IEP | HCCA |
| BP | GO:0009889 | regulation of biosynthetic process | IEP | HCCA |
| BP | GO:0010468 | regulation of gene expression | IEP | HCCA |
| BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0015936 | coenzyme A metabolic process | IEP | HCCA |
| BP | GO:0015937 | coenzyme A biosynthetic process | IEP | HCCA |
| MF | GO:0016301 | kinase activity | IEP | HCCA |
| MF | GO:0016407 | acetyltransferase activity | IEP | HCCA |
| MF | GO:0016410 | N-acyltransferase activity | IEP | HCCA |
| BP | GO:0016570 | histone modification | IEP | HCCA |
| BP | GO:0016573 | histone acetylation | IEP | HCCA |
| CC | GO:0016592 | mediator complex | IEP | HCCA |
| MF | GO:0016740 | transferase activity | IEP | HCCA |
| MF | GO:0016746 | acyltransferase activity | IEP | HCCA |
| MF | GO:0016747 | acyltransferase activity, transferring groups other than amino-acyl groups | IEP | HCCA |
| MF | GO:0016773 | phosphotransferase activity, alcohol group as acceptor | IEP | HCCA |
| MF | GO:0017076 | purine nucleotide binding | IEP | HCCA |
| BP | GO:0018193 | peptidyl-amino acid modification | IEP | HCCA |
| BP | GO:0018205 | peptidyl-lysine modification | IEP | HCCA |
| BP | GO:0018393 | internal peptidyl-lysine acetylation | IEP | HCCA |
| BP | GO:0018394 | peptidyl-lysine acetylation | IEP | HCCA |
| BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0019222 | regulation of metabolic process | IEP | HCCA |
| BP | GO:0019538 | protein metabolic process | IEP | HCCA |
| BP | GO:0019693 | ribose phosphate metabolic process | IEP | HCCA |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | HCCA |
| BP | GO:0031323 | regulation of cellular metabolic process | IEP | HCCA |
| BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | HCCA |
| MF | GO:0032553 | ribonucleotide binding | IEP | HCCA |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | HCCA |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | HCCA |
| BP | GO:0033865 | nucleoside bisphosphate metabolic process | IEP | HCCA |
| BP | GO:0033866 | nucleoside bisphosphate biosynthetic process | IEP | HCCA |
| BP | GO:0033875 | ribonucleoside bisphosphate metabolic process | IEP | HCCA |
| BP | GO:0034030 | ribonucleoside bisphosphate biosynthetic process | IEP | HCCA |
| BP | GO:0034032 | purine nucleoside bisphosphate metabolic process | IEP | HCCA |
| BP | GO:0034033 | purine nucleoside bisphosphate biosynthetic process | IEP | HCCA |
| MF | GO:0034212 | peptide N-acetyltransferase activity | IEP | HCCA |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
| MF | GO:0036094 | small molecule binding | IEP | HCCA |
| BP | GO:0036211 | protein modification process | IEP | HCCA |
| MF | GO:0043167 | ion binding | IEP | HCCA |
| MF | GO:0043168 | anion binding | IEP | HCCA |
| BP | GO:0043412 | macromolecule modification | IEP | HCCA |
| BP | GO:0043543 | protein acylation | IEP | HCCA |
| BP | GO:0044238 | primary metabolic process | IEP | HCCA |
| BP | GO:0046390 | ribose phosphate biosynthetic process | IEP | HCCA |
| BP | GO:0050789 | regulation of biological process | IEP | HCCA |
| BP | GO:0050794 | regulation of cellular process | IEP | HCCA |
| BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0051252 | regulation of RNA metabolic process | IEP | HCCA |
| BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | HCCA |
| MF | GO:0061733 | peptide-lysine-N-acetyltransferase activity | IEP | HCCA |
| BP | GO:0065007 | biological regulation | IEP | HCCA |
| BP | GO:0071704 | organic substance metabolic process | IEP | HCCA |
| BP | GO:0072522 | purine-containing compound biosynthetic process | IEP | HCCA |
| BP | GO:0080090 | regulation of primary metabolic process | IEP | HCCA |
| BP | GO:0090407 | organophosphate biosynthetic process | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | HCCA |
| MF | GO:0140096 | catalytic activity, acting on a protein | IEP | HCCA |
| CC | GO:0140513 | nuclear protein-containing complex | IEP | HCCA |
| BP | GO:1901137 | carbohydrate derivative biosynthetic process | IEP | HCCA |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | HCCA |
| BP | GO:1901293 | nucleoside phosphate biosynthetic process | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| BP | GO:1901564 | organonitrogen compound metabolic process | IEP | HCCA |
| BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | HCCA |
| BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | HCCA |
| No external refs found! |