Spa_g08718 (RPL12-C)


Aliases : RPL12-C

Description : component *(bL12c) of large plastid ribosomal-subunit proteome & original description: none


Gene families : OG0004015 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004015_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g08718
Cluster HCCA: Cluster_90

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00036p00109340 RPL12-A, RPL12,... Protein biosynthesis.organelle translation... 0.1 OrthoFinder output from all 47 species
AT3G27830 RPL12-A, RPL12 ribosomal protein L12-A 0.06 OrthoFinder output from all 47 species
AT3G27850 RPL12-C ribosomal protein L12-C 0.1 OrthoFinder output from all 47 species
Adi_g010756 RPL12-C component *(bL12c) of large plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Adi_g079765 RPL12-C component *(bL12c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Aev_g46439 RPL12-C component *(bL12c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Ala_g28151 RPL12-A, RPL12 component *(bL12c) of large plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Als_g10576 RPL12-C component *(bL12c) of large plastid ribosomal-subunit... 0.09 OrthoFinder output from all 47 species
Als_g26767 RPL12-A, RPL12 component *(bL12c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Aop_g05079 RPL12-A, RPL12 component *(bL12c) of large plastid ribosomal-subunit... 0.17 OrthoFinder output from all 47 species
Azfi_s0003.g007798 RPL12-C component *(bL12c) of large plastid ribosomal-subunit... 0.08 OrthoFinder output from all 47 species
Cba_g26147 RPL12-C component *(bL12c) of large plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Ceric.11G086700.1 RPL12-C, Ceric.11G086700 component *(bL12c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Ceric.23G047100.1 RPL12-A, RPL12,... component *(bL12c) of large plastid ribosomal-subunit... 0.08 OrthoFinder output from all 47 species
Cre13.g581650 No alias Protein biosynthesis.organelle translation... 0.07 OrthoFinder output from all 47 species
Dac_g04548 RPL12-A, RPL12 component *(bL12c) of large plastid ribosomal-subunit... 0.12 OrthoFinder output from all 47 species
Dcu_g09157 RPL12-C component *(bL12c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Dcu_g15795 RPL12-A, RPL12 component *(bL12c) of large plastid ribosomal-subunit... 0.15 OrthoFinder output from all 47 species
Dcu_g41604 RPL12-A, RPL12 component *(bL12c) of large plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Dde_g20806 RPL12-A, RPL12 component *(bL12c) of large plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
GSVIVT01032454001 RPL12-A, RPL12 Protein biosynthesis.organelle translation... 0.05 OrthoFinder output from all 47 species
Gb_05150 RPL12-C component psRPL12 of large ribosomal subunit proteome 0.07 OrthoFinder output from all 47 species
LOC_Os01g47330.1 RPL12-C, LOC_Os01g47330 component psRPL12 of large ribosomal subunit proteome 0.04 OrthoFinder output from all 47 species
LOC_Os05g49320.1 RPL12-C, LOC_Os05g49320 component psRPL12 of large ribosomal subunit proteome 0.1 OrthoFinder output from all 47 species
Len_g10218 RPL12-C component *(bL12c) of large plastid ribosomal-subunit... 0.09 OrthoFinder output from all 47 species
Len_g17443 RPL12-A, RPL12 component *(bL12c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Mp5g15720.1 RPL12-C component psRPL12 of large ribosomal subunit proteome 0.17 OrthoFinder output from all 47 species
Msp_g09960 RPL12-A, RPL12 component *(bL12c) of large plastid ribosomal-subunit... 0.12 OrthoFinder output from all 47 species
Msp_g10664 RPL12-C component *(bL12c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Nbi_g08072 RPL12-A, RPL12 component *(bL12c) of large plastid ribosomal-subunit... 0.12 OrthoFinder output from all 47 species
Ore_g01687 RPL12-C component *(bL12c) of large plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Ore_g06697 RPL12-A, RPL12 component *(bL12c) of large plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Pir_g06429 RPL12-A, RPL12 component *(bL12c) of large plastid ribosomal-subunit... 0.09 OrthoFinder output from all 47 species
Pp3c26_10990V3.1 RPL12-A, RPL12,... ribosomal protein L12-A 0.02 OrthoFinder output from all 47 species
Pp3c4_24130V3.1 RPL12-A, RPL12,... ribosomal protein L12-C 0.05 OrthoFinder output from all 47 species
Pp3c5_2700V3.1 RPL12-C, Pp3c5_2700 ribosomal protein L12-C 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0097.g019415 RPL12-C component *(bL12c) of large plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Sam_g51250 No alias component *(bL12c) of large plastid ribosomal-subunit... 0.08 OrthoFinder output from all 47 species
Solyc02g086730.3.1 RPL12-C, Solyc02g086730 component psRPL12 of large ribosomal subunit proteome 0.05 OrthoFinder output from all 47 species
Solyc02g086740.1.1 RPL12-C, Solyc02g086740 component psRPL12 of large ribosomal subunit proteome 0.09 OrthoFinder output from all 47 species
Spa_g56005 RPL12-C component *(bL12c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Tin_g00273 RPL12-A, RPL12 component *(bL12c) of large plastid ribosomal-subunit... 0.09 OrthoFinder output from all 47 species
Zm00001e020247_P001 RPL12-C, Zm00001e020247 component psRPL12 of large ribosomal subunit proteome 0.1 OrthoFinder output from all 47 species
Zm00001e028001_P001 RPL12-C, Zm00001e028001 component psRPL12 of large ribosomal subunit proteome 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
MF GO:0005261 monoatomic cation channel activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006754 ATP biosynthetic process IEP HCCA
MF GO:0008519 ammonium transmembrane transporter activity IEP HCCA
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009152 purine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0010206 photosystem II repair IEP HCCA
BP GO:0010207 photosystem II assembly IEP HCCA
MF GO:0015252 proton channel activity IEP HCCA
MF GO:0015267 channel activity IEP HCCA
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
BP GO:0015986 proton motive force-driven ATP synthesis IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
BP GO:0030091 protein repair IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0072488 ammonium transmembrane transport IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR008932 Ribosomal_L7/L12_oligo 63 111
IPR013823 Ribosomal_L7/L12_C 123 190
No external refs found!