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  5. Spa_g07291

Spa_g07291


Description : carboxy-terminal processing peptidase *(CtpA) & original description: none


Gene families : OG0001069 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001069_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g07291
Cluster HCCA: Cluster_90

Target Alias Description ECC score Gene Family Method Actions
Azfi_s0093.g043303 No alias carboxy-terminal processing peptidase *(CtpA) & original... 0.04 OrthoFinder output from all 47 species
Cba_g18332 No alias carboxy-terminal processing peptidase *(CtpA) & original... 0.03 OrthoFinder output from all 47 species
Ceric.11G086300.1 Ceric.11G086300 carboxy-terminal processing peptidase *(CtpA) & original... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001532.10 No alias C-terminal processing peptidase, chloroplastic... 0.02 OrthoFinder output from all 47 species
Cre10.g420550 No alias Protein modification.peptide maturation.plastid.CtpA... 0.03 OrthoFinder output from all 47 species
Dde_g11824 No alias carboxy-terminal processing peptidase *(CtpA) & original... 0.05 OrthoFinder output from all 47 species
Dde_g22620 No alias carboxy-terminal processing peptidase *(CtpA) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01001855001 No alias Protein modification.peptide maturation.plastid.CtpA... 0.06 OrthoFinder output from all 47 species
GSVIVT01021388001 No alias Protein modification.peptide maturation.plastid.CtpA... 0.02 OrthoFinder output from all 47 species
Len_g02340 No alias carboxy-terminal processing peptidase *(CtpA) & original... 0.04 OrthoFinder output from all 47 species
Lfl_g30878 No alias carboxy-terminal processing peptidase *(CtpA) & original... 0.03 OrthoFinder output from all 47 species
MA_10425812g0010 No alias Carboxyl-terminal-processing peptidase 2, chloroplastic... 0.02 OrthoFinder output from all 47 species
Msp_g10757 No alias carboxy-terminal processing peptidase *(CtpA) & original... 0.04 OrthoFinder output from all 47 species
Nbi_g14218 No alias carboxy-terminal processing peptidase *(CtpA) & original... 0.03 OrthoFinder output from all 47 species
Ore_g20885 No alias carboxy-terminal processing peptidase *(CtpA) & original... 0.03 OrthoFinder output from all 47 species
Ppi_g47259 No alias carboxy-terminal processing peptidase *(CtpA) & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0058.g014864 No alias not classified & original description: CDS=20-1393 0.04 OrthoFinder output from all 47 species
Solyc12g097030.2.1 Solyc12g097030 carboxy-terminal processing peptidase (CtpA) 0.02 OrthoFinder output from all 47 species
Zm00001e016217_P001 Zm00001e016217 carboxy-terminal processing peptidase (CtpA) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006508 proteolysis IEA Interproscan
MF GO:0008236 serine-type peptidase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR041489 PDZ_6 298 351
IPR005151 Tail-specific_protease 388 549
No external refs found!