1. Home
  2. Species
  3. Stenochlaena palustris
  4. Sequence
  5. Spa_g06166

Spa_g06166 (ATCPSF160, CPSF160)


Aliases : ATCPSF160, CPSF160

Description : component *(CPSF160/Yhh1) of Cleavage and Polyadenylation Specificity Factor (CPSF) complex & original description: none


Gene families : OG0003336 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003336_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g06166

Target Alias Description ECC score Gene Family Method Actions
Als_g01205 ATCPSF160, CPSF160 component *(CPSF160/Yhh1) of Cleavage and... 0.04 OrthoFinder output from all 47 species
Aop_g06976 ATCPSF160, CPSF160 component *(CPSF160/Yhh1) of Cleavage and... 0.02 OrthoFinder output from all 47 species
Aspi01Gene55702.t2 ATCPSF160,... component *(CPSF160/Yhh1) of Cleavage and... 0.03 OrthoFinder output from all 47 species
Aspi01Gene55705.t1 ATCPSF160,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0079.g038419 ATCPSF160, CPSF160 component *(CPSF160/Yhh1) of Cleavage and... 0.05 OrthoFinder output from all 47 species
Cba_g37162 ATCPSF160, CPSF160 component *(CPSF160/Yhh1) of Cleavage and... 0.03 OrthoFinder output from all 47 species
GSVIVT01018506001 ATCPSF160, CPSF160 RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.03 OrthoFinder output from all 47 species
MA_169369g0010 ATCPSF160, CPSF160 Cleavage and polyadenylation specificity factor subunit... 0.03 OrthoFinder output from all 47 species
Msp_g15040 ATCPSF160, CPSF160 component *(CPSF160/Yhh1) of Cleavage and... 0.03 OrthoFinder output from all 47 species
Nbi_g12582 ATCPSF160, CPSF160 component *(CPSF160/Yhh1) of Cleavage and... 0.04 OrthoFinder output from all 47 species
Ore_g06583 ATCPSF160, CPSF160 component *(CPSF160/Yhh1) of Cleavage and... 0.02 OrthoFinder output from all 47 species
Ore_g34270 ATCPSF160, CPSF160 not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004814 arginine-tRNA ligase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006420 arginyl-tRNA aminoacylation IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0031123 RNA 3'-end processing IEP HCCA
BP GO:0031124 mRNA 3'-end processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR004871 Cleavage/polyA-sp_fac_asu_C 1083 1406
IPR018846 Cleavage/polyA-sp_fac_asu_N 143 714
No external refs found!