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  5. Spa_g00162

Spa_g00162 (FdC1)


Aliases : FdC1

Description : ferredoxin targeted to non-NADP reduction & original description: none


Gene families : OG0007770 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007770_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g00162
Cluster HCCA: Cluster_41

Target Alias Description ECC score Gene Family Method Actions
Dac_g00249 FdC1 ferredoxin targeted to non-NADP reduction & original... 0.04 OrthoFinder output from all 47 species
GSVIVT01013191001 FdC1 Ferredoxin C 2, chloroplastic OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Ppi_g18540 FdC1 ferredoxin targeted to non-NADP reduction & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0026.g009549 FdC1 ferredoxin targeted to non-NADP reduction & original... 0.02 OrthoFinder output from all 47 species
Tin_g03053 FdC1 ferredoxin targeted to non-NADP reduction & original... 0.04 OrthoFinder output from all 47 species
Zm00001e012273_P001 FdC1, Zm00001e012273 Ferredoxin C 2, chloroplastic OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0051536 iron-sulfur cluster binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0050661 NADP binding IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001041 2Fe-2S_ferredoxin-type 72 138
No external refs found!