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  5. Ore_g43610

Ore_g43610 (XPO1A, HIT2, ATCRM1,...)


Aliases : XPO1A, HIT2, ATCRM1, XPO1, ATXPO1

Description : nucleocytoplasmic export karyopherin *(XPO1) & original description: none


Gene families : OG0003383 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003383_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g43610
Cluster HCCA: Cluster_98

Target Alias Description ECC score Gene Family Method Actions
Adi_g018503 XPO1A, HIT2,... nucleocytoplasmic export karyopherin *(XPO1) & original... 0.02 OrthoFinder output from all 47 species
Aev_g14729 XPO1A, HIT2,... nucleocytoplasmic export karyopherin *(XPO1) & original... 0.03 OrthoFinder output from all 47 species
Aev_g46968 XPO1A, HIT2,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g06015 XPO1A, HIT2,... nucleocytoplasmic export karyopherin *(XPO1) & original... 0.03 OrthoFinder output from all 47 species
Aob_g14359 XPO1A, HIT2,... nucleocytoplasmic export karyopherin *(XPO1) & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene60835.t1 XPO1A, HIT2,... nucleocytoplasmic export karyopherin *(XPO1) & original... 0.03 OrthoFinder output from all 47 species
Ceric.14G073300.1 XPO1A, HIT2,... nucleocytoplasmic export karyopherin *(XPO1) & original... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001154.14 CRM1B, XPO1B Protein EXPORTIN 1B OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Len_g01916 XPO1A, HIT2,... nucleocytoplasmic export karyopherin *(XPO1) & original... 0.03 OrthoFinder output from all 47 species
Sam_g14009 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g40475 No alias nucleocytoplasmic export karyopherin *(XPO1) & original... 0.02 OrthoFinder output from all 47 species
Zm00001e011624_P002 XPO1A, HIT2,... XPO1 nucleocytoplasmic export karyopherin 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEA Interproscan
MF GO:0031267 small GTPase binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004357 glutamate-cysteine ligase activity IEP HCCA
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006575 cellular modified amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008175 tRNA methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016881 acid-amino acid ligase activity IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0042398 cellular modified amino acid biosynthetic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR014877 XPO1_C_dom 712 1034
IPR013598 Exportin-1/Importin-b-like 115 258
IPR041123 CRM1_repeat 337 372
IPR040485 XPO1_repeat_3 489 538
IPR041235 Exp1_repeat_2 408 475
IPR001494 Importin-beta_N 37 103
No external refs found!