Ore_g30141 (SNL2)

Aliases : SNL2

Description : component *(SNL) of histone deacetylase machineries & original description: none

Gene families : OG0000547 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000547_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ore_g30141
Cluster	HCCA: Cluster_98

Target	Alias	Description	ECC score	Gene Family Method
AT1G10450	SNL6	SIN3-like 6	0.04	OrthoFinder output from all 47 species
AT1G24190	SNL3, ATSIN3, SIN3	SIN3-like 3	0.04	OrthoFinder output from all 47 species
AT1G59890	SNL5	SIN3-like 5	0.03	OrthoFinder output from all 47 species
Adi_g103364	SNL4	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Als_g32002	SNL3, ATSIN3, SIN3	component *(SNL) of histone deacetylase machineries &...	0.03	OrthoFinder output from all 47 species
Aob_g27014	SNL3, ATSIN3, SIN3	component *(SNL) of histone deacetylase machineries &...	0.02	OrthoFinder output from all 47 species
Aspi01Gene32665.t1	SNL4, Aspi01Gene32665	component *(SNL) of histone deacetylase machineries &...	0.03	OrthoFinder output from all 47 species
Azfi_s0008.g011658	SNL4	component *(SNL) of histone deacetylase machineries &...	0.02	OrthoFinder output from all 47 species
Cba_g07499	SNL2	component *(SNL) of histone deacetylase machineries &...	0.02	OrthoFinder output from all 47 species
Cba_g16029	SNL4	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.02G103500.1	SNL3, ATSIN3,...	component *(SNL) of histone deacetylase machineries &...	0.03	OrthoFinder output from all 47 species
Ceric.02G103800.1	SNL4, Ceric.02G103800	component *(SNL) of histone deacetylase machineries &...	0.03	OrthoFinder output from all 47 species
Ceric.31G072300.1	SNL4, Ceric.31G072300	component *(SNL) of histone deacetylase machineries &...	0.04	OrthoFinder output from all 47 species
Dcu_g18942	SNL4	component *(SNL) of histone deacetylase machineries &...	0.02	OrthoFinder output from all 47 species
Ehy_g07946	SNL4	component *(SNL) of histone deacetylase machineries &...	0.02	OrthoFinder output from all 47 species
GSVIVT01020136001	SNL3, ATSIN3, SIN3	Chromatin organisation.histone modifications.histone...	0.02	OrthoFinder output from all 47 species
GSVIVT01032579001	SNL2	Chromatin organisation.histone modifications.histone...	0.03	OrthoFinder output from all 47 species
Gb_35988	SNL4	component SNL of histone deacetylase machineries	0.05	OrthoFinder output from all 47 species
LOC_Os01g01960.1	SNL3, ATSIN3,...	component SNL of histone deacetylase machineries	0.03	OrthoFinder output from all 47 species
LOC_Os05g01020.2	SNL4, LOC_Os05g01020	component SNL of histone deacetylase machineries	0.03	OrthoFinder output from all 47 species
MA_18241g0010	SNL4	component SNL of histone deacetylase machineries	0.03	OrthoFinder output from all 47 species
Solyc02g067570.3.1	SNL2, Solyc02g067570	component SNL of histone deacetylase machineries	0.02	OrthoFinder output from all 47 species
Spa_g18268	SNL4	component *(SNL) of histone deacetylase machineries &...	0.03	OrthoFinder output from all 47 species
Tin_g13041	SNL4	component *(SNL) of histone deacetylase machineries &...	0.03	OrthoFinder output from all 47 species
Zm00001e017111_P002	SNL4, Zm00001e017111	component SNL of histone deacetylase machineries	0.03	OrthoFinder output from all 47 species
Zm00001e025644_P001	SNL4, Zm00001e025644	component SNL of histone deacetylase machineries	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0004175	endopeptidase activity	IEP	HCCA
MF	GO:0004176	ATP-dependent peptidase activity	IEP	HCCA
MF	GO:0004222	metalloendopeptidase activity	IEP	HCCA
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	HCCA
BP	GO:0006520	amino acid metabolic process	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
MF	GO:0008237	metallopeptidase activity	IEP	HCCA
BP	GO:0015031	protein transport	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
MF	GO:0019899	enzyme binding	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0031267	small GTPase binding	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
BP	GO:0043038	amino acid activation	IEP	HCCA
BP	GO:0043039	tRNA aminoacylation	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
MF	GO:0051020	GTPase binding	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003822	PAH	58	102
IPR003822	PAH	281	323
IPR013194	HDAC_interact_dom	412	504

External Links

No external refs found!

Ore_g30141 (SNL2)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation