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  5. Ore_g28364

Ore_g28364 (ATRAP, RAP)


Aliases : ATRAP, RAP

Description : 16S-rRNA maturation factor *(RAP) & original description: none


Gene families : OG0002819 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002819_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g28364
Cluster HCCA: Cluster_152

Target Alias Description ECC score Gene Family Method Actions
AT2G31890 ATRAP, RAP RAP 0.05 OrthoFinder output from all 47 species
Adi_g008836 ATRAP, RAP 16S-rRNA maturation factor *(RAP) & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g02427 ATRAP, RAP 16S-rRNA maturation factor *(RAP) & original description: none 0.07 OrthoFinder output from all 47 species
Aop_g08359 ATRAP, RAP 16S-rRNA maturation factor *(RAP) & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g14001 ATRAP, RAP 16S-rRNA maturation factor *(RAP) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.06G056200.1 ATRAP, RAP,... 16S-rRNA maturation factor *(RAP) & original... 0.03 OrthoFinder output from all 47 species
Cre09.g389541 No alias No description available 0.02 OrthoFinder output from all 47 species
GSVIVT01038263001 ATRAP, RAP RAP domain-containing protein, chloroplastic... 0.03 OrthoFinder output from all 47 species
LOC_Os03g31150.3 ATRAP, RAP,... RAP domain-containing protein, chloroplastic OS=Oryza... 0.03 OrthoFinder output from all 47 species
Lfl_g05571 ATRAP, RAP 16S-rRNA maturation factor *(RAP) & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g24589 ATRAP, RAP 16S-rRNA maturation factor *(RAP) & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0023.g008762 ATRAP, RAP 16S-rRNA maturation factor *(RAP) & original... 0.02 OrthoFinder output from all 47 species
Smo412574 ATRAP, RAP RAP domain-containing protein, chloroplastic... 0.02 OrthoFinder output from all 47 species
Smo413123 ATRAP, RAP RAP domain-containing protein, chloroplastic OS=Oryza... 0.02 OrthoFinder output from all 47 species
Solyc12g017510.2.1 ATRAP, RAP,... RAP domain-containing protein, chloroplastic... 0.03 OrthoFinder output from all 47 species
Zm00001e016550_P002 ATRAP, RAP,... RAP domain-containing protein, chloroplastic OS=Oryza... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004176 ATP-dependent peptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004827 proline-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006433 prolyl-tRNA aminoacylation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006536 glutamate metabolic process IEP HCCA
BP GO:0006537 glutamate biosynthetic process IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0009064 glutamine family amino acid metabolic process IEP HCCA
BP GO:0009084 glutamine family amino acid biosynthetic process IEP HCCA
MF GO:0015930 glutamate synthase activity IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0030976 thiamine pyrophosphate binding IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0043648 dicarboxylic acid metabolic process IEP HCCA
BP GO:0043650 dicarboxylic acid biosynthetic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
MF GO:0050997 quaternary ammonium group binding IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
MF GO:1901681 sulfur compound binding IEP HCCA
InterPro domains Description Start Stop
IPR013584 RAP 646 702
No external refs found!