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  5. Ore_g16794

Ore_g16794


Description : uridine 5-carboxymethylaminomethyl modification enzyme *(TrmE) & original description: none


Gene families : OG0006066 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006066_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g16794

Target Alias Description ECC score Gene Family Method Actions
AT1G78010 No alias tRNA modification GTPase, putative 0.03 OrthoFinder output from all 47 species
Aev_g30631 No alias uridine 5-carboxymethylaminomethyl modification enzyme... 0.05 OrthoFinder output from all 47 species
Azfi_s0078.g038163 No alias uridine 5-carboxymethylaminomethyl modification enzyme... 0.03 OrthoFinder output from all 47 species
Ceric.23G016700.1 Ceric.23G016700 uridine 5-carboxymethylaminomethyl modification enzyme... 0.03 OrthoFinder output from all 47 species
Ehy_g02615 No alias uridine 5-carboxymethylaminomethyl modification enzyme... 0.03 OrthoFinder output from all 47 species
MA_10428042g0020 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Smo96586 No alias No description available 0.03 OrthoFinder output from all 47 species
Zm00001e022362_P004 Zm00001e022362 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004497 monooxygenase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR025867 MnmE_helical 272 612
IPR006073 GTP-bd 366 470
IPR018948 GTP-bd_TrmE_N 140 269
No external refs found!