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  5. Ore_g16132

Ore_g16132 (PRT6)


Aliases : PRT6

Description : type-I-residues E3 ubiquitin ligase *(PRT6) & original description: none


Gene families : OG0003565 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003565_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g16132

Target Alias Description ECC score Gene Family Method Actions
AT5G02310 PRT6 proteolysis 6 0.08 OrthoFinder output from all 47 species
Aev_g08637 PRT6 type-I-residues E3 ubiquitin ligase *(PRT6) & original... 0.04 OrthoFinder output from all 47 species
Als_g05145 PRT6 type-I-residues E3 ubiquitin ligase *(PRT6) & original... 0.03 OrthoFinder output from all 47 species
Aob_g27314 PRT6 type-I-residues E3 ubiquitin ligase *(PRT6) & original... 0.05 OrthoFinder output from all 47 species
Aspi01Gene63013.t1 PRT6, Aspi01Gene63013 type-I-residues E3 ubiquitin ligase *(PRT6) & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene63014.t1 PRT6, Aspi01Gene63014 type-I-residues E3 ubiquitin ligase *(PRT6) & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene63015.t1 PRT6, Aspi01Gene63015 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene67139.t1 PRT6, Aspi01Gene67139 type-I-residues E3 ubiquitin ligase *(PRT6) & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0022.g015984 PRT6 type-I-residues E3 ubiquitin ligase *(PRT6) & original... 0.03 OrthoFinder output from all 47 species
Ceric.29G053500.1 PRT6, Ceric.29G053500 type-I-residues E3 ubiquitin ligase *(PRT6) & original... 0.05 OrthoFinder output from all 47 species
Ceric.32G041800.1 PRT6, Ceric.32G041800 type-I-residues E3 ubiquitin ligase *(PRT6) & original... 0.02 OrthoFinder output from all 47 species
Dcu_g37411 PRT6 type-I-residues E3 ubiquitin ligase *(PRT6) & original... 0.03 OrthoFinder output from all 47 species
Dde_g11006 PRT6 type-I-residues E3 ubiquitin ligase *(PRT6) & original... 0.03 OrthoFinder output from all 47 species
Ehy_g10040 PRT6 type-I-residues E3 ubiquitin ligase *(PRT6) & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01034169001 PRT6 Protein degradation.N-end rule pathway of targeted... 0.06 OrthoFinder output from all 47 species
Gb_11947 PRT6 type-I-residues E3 ubiquitin ligase (PRT6) 0.02 OrthoFinder output from all 47 species
LOC_Os01g05500.2 PRT6, LOC_Os01g05500 type-I-residues E3 ubiquitin ligase (PRT6) 0.05 OrthoFinder output from all 47 species
Len_g57965 PRT6 type-I-residues E3 ubiquitin ligase *(PRT6) & original... 0.02 OrthoFinder output from all 47 species
Lfl_g04298 PRT6 type-I-residues E3 ubiquitin ligase *(PRT6) & original... 0.08 OrthoFinder output from all 47 species
MA_387g0010 PRT6 type-I-residues E3 ubiquitin ligase (PRT6) 0.02 OrthoFinder output from all 47 species
Mp7g16320.1 PRT6 type-I-residues E3 ubiquitin ligase (PRT6) 0.05 OrthoFinder output from all 47 species
Msp_g15711 PRT6 type-I-residues E3 ubiquitin ligase *(PRT6) & original... 0.04 OrthoFinder output from all 47 species
Nbi_g12851 PRT6 type-I-residues E3 ubiquitin ligase *(PRT6) & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0119.g021264 PRT6 type-I-residues E3 ubiquitin ligase *(PRT6) & original... 0.04 OrthoFinder output from all 47 species
Sam_g00681 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g18069 No alias type-I-residues E3 ubiquitin ligase *(PRT6) & original... 0.04 OrthoFinder output from all 47 species
Smo438209 PRT6 Protein degradation.N-end rule pathway of targeted... 0.04 OrthoFinder output from all 47 species
Solyc09g010830.4.1 PRT6, Solyc09g010830 type-I-residues E3 ubiquitin ligase (PRT6) 0.02 OrthoFinder output from all 47 species
Spa_g18736 PRT6 type-I-residues E3 ubiquitin ligase *(PRT6) & original... 0.04 OrthoFinder output from all 47 species
Zm00001e016914_P004 PRT6, Zm00001e016914 type-I-residues E3 ubiquitin ligase (PRT6) 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0004611 phosphoenolpyruvate carboxykinase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006099 tricarboxylic acid cycle IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006887 exocytosis IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0008964 phosphoenolpyruvate carboxylase activity IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0015977 carbon fixation IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
BP GO:0032940 secretion by cell IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
BP GO:0046903 secretion IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
BP GO:0140352 export from cell IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR044046 E3_ligase_UBR-like_C 1703 2181
IPR003126 Znf_UBR 128 194
No external refs found!