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  5. Ppi_g59702

Ppi_g59702


Description : not classified & original description: none


Gene families : OG0006414 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006414_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g59702

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00208640 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g10690... 0.04 OrthoFinder output from all 47 species
AT5G10690 No alias pentatricopeptide (PPR) repeat-containing protein / CBS... 0.03 OrthoFinder output from all 47 species
Als_g01812 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g23391 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g08894 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene37776.t1 Aspi01Gene37776 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0003.g007615 No alias not classified & original description: CDS=350-1960 0.06 OrthoFinder output from all 47 species
Dac_g18278 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g03880 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01035517001 No alias Pentatricopeptide repeat-containing protein At5g10690... 0.03 OrthoFinder output from all 47 species
LOC_Os09g26190.1 LOC_Os09g26190 Pentatricopeptide repeat-containing protein At5g10690... 0.02 OrthoFinder output from all 47 species
Ore_g20397 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g18420 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0109.g020562 No alias not classified & original description: CDS=129-2003 0.04 OrthoFinder output from all 47 species
Sam_g19413 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo52692 No alias Pentatricopeptide repeat-containing protein At5g10690... 0.03 OrthoFinder output from all 47 species
Solyc08g069010.4.1 Solyc08g069010 Pentatricopeptide repeat-containing protein At5g10690... 0.04 OrthoFinder output from all 47 species
Zm00001e009851_P003 Zm00001e009851 Pentatricopeptide repeat-containing protein At5g10690... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0017038 protein import IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 291 312
IPR000644 CBS_dom 544 606
IPR002885 Pentatricopeptide_repeat 144 166
IPR002885 Pentatricopeptide_repeat 216 264
No external refs found!