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Ppi_g53011 (emb2004)


Aliases : emb2004

Description : not classified & original description: none


Gene families : OG0006225 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006225_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g53011

Target Alias Description ECC score Gene Family Method Actions
AT1G10510 emb2004 RNI-like superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g059435 emb2004 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g15959 emb2004 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cre06.g302700 No alias RAN GTPase-activating protein 1 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
GSVIVT01020179001 emb2004 RAN GTPase-activating protein 1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
LOC_Os06g13050.1 LOC_Os06g13050 Peroxidase 65 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Lfl_g04112 emb2004 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g05987 emb2004 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0042.g012772 emb2004 not classified & original description: CDS=2191-2943 0.02 OrthoFinder output from all 47 species
Smo93050 emb2004 RAN GTPase-activating protein 1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Zm00001e036062_P001 emb2004, Zm00001e036062 RAN GTPase-activating protein 1 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003856 3-dehydroquinate synthase activity IEP HCCA
MF GO:0004177 aminopeptidase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
BP GO:0009072 aromatic amino acid metabolic process IEP HCCA
BP GO:0009073 aromatic amino acid family biosynthetic process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030151 molybdenum ion binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001611 Leu-rich_rpt 256 277
IPR001611 Leu-rich_rpt 398 418
IPR001611 Leu-rich_rpt 371 389
IPR001611 Leu-rich_rpt 507 529
IPR001611 Leu-rich_rpt 537 559
IPR001611 Leu-rich_rpt 226 249
IPR001611 Leu-rich_rpt 483 502
IPR001611 Leu-rich_rpt 339 361
IPR001611 Leu-rich_rpt 424 441
IPR001611 Leu-rich_rpt 452 471
No external refs found!