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  5. Ppi_g25090

Ppi_g25090 (emb2746)


Aliases : emb2746

Description : exoribonuclease *(RNase J) & original description: none


Gene families : OG0003970 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003970_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g25090

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00241540 emb2746,... RNA processing.organelle machineries.ribonuclease... 0.04 OrthoFinder output from all 47 species
AT5G63420 emb2746 RNA-metabolising metallo-beta-lactamase family protein 0.03 OrthoFinder output from all 47 species
Ala_g32457 emb2746 exoribonuclease *(RNase J) & original description: none 0.06 OrthoFinder output from all 47 species
Als_g22857 emb2746 exoribonuclease *(RNase J) & original description: none 0.06 OrthoFinder output from all 47 species
Aspi01Gene12401.t1 emb2746, Aspi01Gene12401 exoribonuclease *(RNase J) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g22106 emb2746 exoribonuclease *(RNase J) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01008515001 emb2746 Vesicle trafficking.target membrane tethering.DSL1... 0.03 OrthoFinder output from all 47 species
Gb_29169 emb2746 exo-/endoribonuclease (RNase J) 0.05 OrthoFinder output from all 47 species
LOC_Os02g33610.1 emb2746, LOC_Os02g33610 exo-/endoribonuclease (RNase J) 0.02 OrthoFinder output from all 47 species
MA_10430099g0010 emb2746 no description available(sp|q84w56|rnj_arath : 150.0) 0.02 OrthoFinder output from all 47 species
MA_10437259g0030 emb2746 no description available(sp|q84w56|rnj_arath : 164.0) 0.03 OrthoFinder output from all 47 species
Mp3g10830.1 emb2746 exo-/endoribonuclease (RNase J) 0.04 OrthoFinder output from all 47 species
Msp_g15010 emb2746 exoribonuclease *(RNase J) & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g25599 emb2746 exoribonuclease *(RNase J) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g40893 emb2746 exoribonuclease *(RNase J) & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g04183 emb2746 exoribonuclease *(RNase J) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g16311 No alias exoribonuclease *(RNase J) & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g23289 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc03g111260.3.1 emb2746, Solyc03g111260 exo-/endoribonuclease (RNase J) 0.04 OrthoFinder output from all 47 species
Spa_g18551 emb2746 exoribonuclease *(RNase J) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g22135 emb2746 exoribonuclease *(RNase J) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e013900_P001 emb2746, Zm00001e013900 exo-/endoribonuclease (RNase J) 0.06 OrthoFinder output from all 47 species
Zm00001e025070_P003 emb2746, Zm00001e025070 exo-/endoribonuclease (RNase J) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003856 3-dehydroquinate synthase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0009072 aromatic amino acid metabolic process IEP HCCA
BP GO:0009073 aromatic amino acid family biosynthetic process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR044822 Myb_DNA-bind_4 891 979
IPR011108 RMMBL 453 510
IPR001279 Metallo-B-lactamas 129 265
No external refs found!