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  5. Ppi_g16350

Ppi_g16350 (EMB139, EMB506)


Aliases : EMB139, EMB506

Description : not classified & original description: none


Gene families : OG0002523 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002523_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g16350

Target Alias Description ECC score Gene Family Method Actions
AT5G40160 EMB139, EMB506 Ankyrin repeat family protein 0.08 OrthoFinder output from all 47 species
Adi_g032639 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g045216 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g12249 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g25499 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0212.g058202 No alias not classified & original description: CDS=359-1396 0.05 OrthoFinder output from all 47 species
Azfi_s0371.g067116 EMB16, EMB2036, AKRP not classified & original description: CDS=69-1934 0.03 OrthoFinder output from all 47 species
Ceric.02G110600.1 Ceric.02G110600 not classified & original description: pacid=50584977... 0.04 OrthoFinder output from all 47 species
Dac_g10355 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g36507 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g10933 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g05196 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g24387 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01005198001 EMB16, EMB2036, AKRP Ankyrin repeat domain-containing protein, chloroplastic... 0.02 OrthoFinder output from all 47 species
Gb_02757 EMB139, EMB506 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os03g04300.3 EMB16, EMB2036,... Ankyrin repeat domain-containing protein, chloroplastic... 0.03 OrthoFinder output from all 47 species
Len_g59009 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g00869 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Nbi_g38840 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g04583 EMB139, EMB506 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g18486 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g52287 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Solyc02g061820.4.1 EMB16, EMB2036,... Ankyrin repeat domain-containing protein, chloroplastic... 0.03 OrthoFinder output from all 47 species
Spa_g15917 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g32282 EMB139, EMB506 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e000291_P001 EMB16, EMB2036,... Ankyrin repeat domain-containing protein, chloroplastic... 0.02 OrthoFinder output from all 47 species
Zm00001e025292_P002 EMB139, EMB506,... Ankyrin repeat domain-containing protein EMB506,... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
BP GO:0010206 photosystem II repair IEP HCCA
BP GO:0010207 photosystem II assembly IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0030091 protein repair IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR002110 Ankyrin_rpt 290 367
No external refs found!