AMTR_s00110p00154620 (emb2458,...)

Aliases : emb2458, evm_27.TU.AmTr_v1.0_scaffold00110.130

Description : Probable inactive ATP-dependent zinc metalloprotease FTSHI 5, chloroplastic OS=Arabidopsis thaliana

Gene families : OG0007060 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007060_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00110p00154620
Cluster	HCCA: Cluster_101

Target	Alias	Description	ECC score	Gene Family Method
AT3G04340	emb2458	FtsH extracellular protease family	0.04	OrthoFinder output from all 47 species
Aob_g10860	emb2458	component *(FtsHi) of protein translocation ATPase motor...	0.02	OrthoFinder output from all 47 species
Aspi01Gene59749.t1	Aspi01Gene59749	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0154.g053499	emb2458	component *(FtsHi) of protein translocation ATPase motor...	0.04	OrthoFinder output from all 47 species
Ceric.26G060900.1	emb2458, Ceric.26G060900	component *(FtsHi) of protein translocation ATPase motor...	0.04	OrthoFinder output from all 47 species
Dcu_g02047	emb2458	component *(FtsHi) of protein translocation ATPase motor...	0.02	OrthoFinder output from all 47 species
GSVIVT01021791001	emb2458	Probable inactive ATP-dependent zinc metalloprotease...	0.03	OrthoFinder output from all 47 species
Gb_28496	emb2458	Probable inactive ATP-dependent zinc metalloprotease...	0.03	OrthoFinder output from all 47 species
Len_g01924	emb2458	component *(FtsHi) of protein translocation ATPase motor...	0.03	OrthoFinder output from all 47 species
Lfl_g22625	emb2458	component *(FtsHi) of protein translocation ATPase motor...	0.03	OrthoFinder output from all 47 species
MA_10435946g0010	emb2458	Probable inactive ATP-dependent zinc metalloprotease...	0.02	OrthoFinder output from all 47 species
MA_9758g0010	emb2458	Probable inactive ATP-dependent zinc metalloprotease...	0.03	OrthoFinder output from all 47 species
Mp6g10290.1	emb2458	Probable inactive ATP-dependent zinc metalloprotease...	0.06	OrthoFinder output from all 47 species
Ore_g16438	emb2458	component *(FtsHi) of protein translocation ATPase motor...	0.03	OrthoFinder output from all 47 species
Ppi_g03996	emb2458	component *(FtsHi) of protein translocation ATPase motor...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0225.g026312	emb2458	component *(FtsHi) of protein translocation ATPase motor...	0.03	OrthoFinder output from all 47 species
Sam_g14588	No alias	component *(FtsHi) of protein translocation ATPase motor...	0.03	OrthoFinder output from all 47 species
Solyc02g032960.2.1	emb2458, Solyc02g032960	Probable inactive ATP-dependent zinc metalloprotease...	0.03	OrthoFinder output from all 47 species
Spa_g05748	emb2458	component *(FtsHi) of protein translocation ATPase motor...	0.03	OrthoFinder output from all 47 species
Tin_g07565	emb2458	component *(FtsHi) of protein translocation ATPase motor...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004175	endopeptidase activity	None	Extended
MF	GO:0004222	metalloendopeptidase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006508	proteolysis	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008233	peptidase activity	None	Extended
MF	GO:0008237	metallopeptidase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000148	1,3-beta-D-glucan synthase complex	IEP	HCCA
BP	GO:0000271	polysaccharide biosynthetic process	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003777	microtubule motor activity	IEP	HCCA
MF	GO:0003843	1,3-beta-D-glucan synthase activity	IEP	HCCA
MF	GO:0003916	DNA topoisomerase activity	IEP	HCCA
MF	GO:0003917	DNA topoisomerase type I (single strand cut, ATP-independent) activity	IEP	HCCA
MF	GO:0003918	DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity	IEP	HCCA
MF	GO:0003950	NAD+ ADP-ribosyltransferase activity	IEP	HCCA
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	HCCA
CC	GO:0005575	cellular_component	IEP	HCCA
CC	GO:0005634	nucleus	IEP	HCCA
CC	GO:0005694	chromosome	IEP	HCCA
BP	GO:0006074	(1->3)-beta-D-glucan metabolic process	IEP	HCCA
BP	GO:0006075	(1->3)-beta-D-glucan biosynthetic process	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006265	DNA topological change	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	HCCA
BP	GO:0006471	obsolete protein ADP-ribosylation	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0007018	microtubule-based movement	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
BP	GO:0009250	glucan biosynthetic process	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
MF	GO:0016757	glycosyltransferase activity	IEP	HCCA
MF	GO:0016763	pentosyltransferase activity	IEP	HCCA
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	HCCA
MF	GO:0030247	polysaccharide binding	IEP	HCCA
BP	GO:0033692	cellular polysaccharide biosynthetic process	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
MF	GO:0035251	UDP-glucosyltransferase activity	IEP	HCCA
BP	GO:0043038	amino acid activation	IEP	HCCA
BP	GO:0043039	tRNA aminoacylation	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0051273	beta-glucan metabolic process	IEP	HCCA
BP	GO:0051274	beta-glucan biosynthetic process	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
BP	GO:0071103	DNA conformation change	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
CC	GO:0098797	plasma membrane protein complex	IEP	HCCA
CC	GO:0110165	cellular anatomical entity	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA
MF	GO:2001070	starch binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000642	Peptidase_M41	971	1147
IPR003959	ATPase_AAA_core	692	825

External Links

No external refs found!

AMTR_s00110p00154620 (emb2458,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation