AMTR_s00110p00154620 (emb2458,...)


Aliases : emb2458, evm_27.TU.AmTr_v1.0_scaffold00110.130

Description : Probable inactive ATP-dependent zinc metalloprotease FTSHI 5, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0007060 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007060_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00110p00154620
Cluster HCCA: Cluster_101

Target Alias Description ECC score Gene Family Method Actions
AT3G04340 emb2458 FtsH extracellular protease family 0.04 OrthoFinder output from all 47 species
Aob_g10860 emb2458 component *(FtsHi) of protein translocation ATPase motor... 0.02 OrthoFinder output from all 47 species
Aspi01Gene59749.t1 Aspi01Gene59749 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0154.g053499 emb2458 component *(FtsHi) of protein translocation ATPase motor... 0.04 OrthoFinder output from all 47 species
Ceric.26G060900.1 emb2458, Ceric.26G060900 component *(FtsHi) of protein translocation ATPase motor... 0.04 OrthoFinder output from all 47 species
Dcu_g02047 emb2458 component *(FtsHi) of protein translocation ATPase motor... 0.02 OrthoFinder output from all 47 species
GSVIVT01021791001 emb2458 Probable inactive ATP-dependent zinc metalloprotease... 0.03 OrthoFinder output from all 47 species
Gb_28496 emb2458 Probable inactive ATP-dependent zinc metalloprotease... 0.03 OrthoFinder output from all 47 species
Len_g01924 emb2458 component *(FtsHi) of protein translocation ATPase motor... 0.03 OrthoFinder output from all 47 species
Lfl_g22625 emb2458 component *(FtsHi) of protein translocation ATPase motor... 0.03 OrthoFinder output from all 47 species
MA_10435946g0010 emb2458 Probable inactive ATP-dependent zinc metalloprotease... 0.02 OrthoFinder output from all 47 species
MA_9758g0010 emb2458 Probable inactive ATP-dependent zinc metalloprotease... 0.03 OrthoFinder output from all 47 species
Mp6g10290.1 emb2458 Probable inactive ATP-dependent zinc metalloprotease... 0.06 OrthoFinder output from all 47 species
Ore_g16438 emb2458 component *(FtsHi) of protein translocation ATPase motor... 0.03 OrthoFinder output from all 47 species
Ppi_g03996 emb2458 component *(FtsHi) of protein translocation ATPase motor... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0225.g026312 emb2458 component *(FtsHi) of protein translocation ATPase motor... 0.03 OrthoFinder output from all 47 species
Sam_g14588 No alias component *(FtsHi) of protein translocation ATPase motor... 0.03 OrthoFinder output from all 47 species
Solyc02g032960.2.1 emb2458, Solyc02g032960 Probable inactive ATP-dependent zinc metalloprotease... 0.03 OrthoFinder output from all 47 species
Spa_g05748 emb2458 component *(FtsHi) of protein translocation ATPase motor... 0.03 OrthoFinder output from all 47 species
Tin_g07565 emb2458 component *(FtsHi) of protein translocation ATPase motor... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004222 metalloendopeptidase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006508 proteolysis IEA Interproscan
Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP HCCA
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity IEP HCCA
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP HCCA
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP HCCA
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006471 obsolete protein ADP-ribosylation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016763 pentosyltransferase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0030247 polysaccharide binding IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:2001070 starch binding IEP HCCA
InterPro domains Description Start Stop
IPR000642 Peptidase_M41 971 1147
IPR003959 ATPase_AAA_core 692 825
No external refs found!