AMTR_s00106p00046740 (EMB2369,...)


Aliases : EMB2369, evm_27.TU.AmTr_v1.0_scaffold00106.25

Description : Protein biosynthesis.aminoacyl-tRNA synthetase activities.leucine-tRNA ligase


Gene families : OG0005525 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005525_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00106p00046740
Cluster HCCA: Cluster_102

Target Alias Description ECC score Gene Family Method Actions
AT4G04350 EMB2369 tRNA synthetase class I (I, L, M and V) family protein 0.03 OrthoFinder output from all 47 species
Adi_g086865 EMB2369 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g109524 EMB2369 leucine-tRNA ligase & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g11026 EMB2369 leucine-tRNA ligase & original description: none 0.04 OrthoFinder output from all 47 species
Als_g17065 EMB2369 leucine-tRNA ligase & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g03591 EMB2369 leucine-tRNA ligase & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g12623 EMB2369 leucine-tRNA ligase & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.03G067200.1 EMB2369, Ceric.03G067200 not classified & original description: pacid=50572495... 0.03 OrthoFinder output from all 47 species
Ceric.03G067300.1 EMB2369, Ceric.03G067300 leucine-tRNA ligase & original description:... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000865.51 EMB2369 Protein biosynthesis.aminoacyl-tRNA synthetase... 0.02 OrthoFinder output from all 47 species
Cre13.g578451 EMB2369 Protein biosynthesis.aminoacyl-tRNA synthetase... 0.05 OrthoFinder output from all 47 species
Dac_g01026 EMB2369 leucine-tRNA ligase & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g03124 EMB2369 leucine-tRNA ligase & original description: none 0.06 OrthoFinder output from all 47 species
Dde_g07073 EMB2369 leucine-tRNA ligase & original description: none 0.08 OrthoFinder output from all 47 species
Ehy_g01662 EMB2369 leucine-tRNA ligase & original description: none 0.06 OrthoFinder output from all 47 species
GSVIVT01012668001 EMB2369 Protein biosynthesis.aminoacyl-tRNA synthetase... 0.12 OrthoFinder output from all 47 species
Gb_36904 EMB2369 leucine-tRNA ligase 0.08 OrthoFinder output from all 47 species
LOC_Os01g03020.1 EMB2369, LOC_Os01g03020 leucine-tRNA ligase 0.05 OrthoFinder output from all 47 species
Len_g36010 EMB2369 leucine-tRNA ligase & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g03404 EMB2369 leucine-tRNA ligase & original description: none 0.07 OrthoFinder output from all 47 species
MA_413765g0010 EMB2369 leucine-tRNA ligase 0.03 OrthoFinder output from all 47 species
MA_509140g0010 EMB2369 Leucine--tRNA ligase, chloroplastic/mitochondrial... 0.03 OrthoFinder output from all 47 species
MA_9972763g0010 EMB2369 Leucine--tRNA ligase, chloroplastic/mitochondrial... 0.04 OrthoFinder output from all 47 species
Mp3g22600.1 EMB2369 leucine-tRNA ligase 0.05 OrthoFinder output from all 47 species
Msp_g18916 EMB2369 leucine-tRNA ligase & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g15838 EMB2369 leucine-tRNA ligase & original description: none 0.06 OrthoFinder output from all 47 species
Pir_g15404 EMB2369 leucine-tRNA ligase & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g26221 EMB2369 leucine-tRNA ligase & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g48734 EMB2369 leucine-tRNA ligase & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g16597 No alias leucine-tRNA ligase & original description: none 0.04 OrthoFinder output from all 47 species
Solyc02g080990.2.1 EMB2369, Solyc02g080990 leucine-tRNA ligase 0.02 OrthoFinder output from all 47 species
Spa_g15501 EMB2369 leucine-tRNA ligase & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e025691_P001 EMB2369, Zm00001e025691 leucine-tRNA ligase 0.1 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEA Interproscan
MF GO:0002161 aminoacyl-tRNA editing activity IEA Interproscan
MF GO:0004812 aminoacyl-tRNA ligase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0005737 cytoplasm IEA Interproscan
BP GO:0006418 tRNA aminoacylation for protein translation IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004345 glucose-6-phosphate dehydrogenase activity IEP HCCA
MF GO:0004789 thiamine-phosphate diphosphorylase activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0005996 monosaccharide metabolic process IEP HCCA
BP GO:0006006 glucose metabolic process IEP HCCA
BP GO:0006066 alcohol metabolic process IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006766 vitamin metabolic process IEP HCCA
BP GO:0006767 water-soluble vitamin metabolic process IEP HCCA
BP GO:0006772 thiamine metabolic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0009110 vitamin biosynthetic process IEP HCCA
BP GO:0009228 thiamine biosynthetic process IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0019318 hexose metabolic process IEP HCCA
MF GO:0030976 thiamine pyrophosphate binding IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0034308 primary alcohol metabolic process IEP HCCA
BP GO:0034309 primary alcohol biosynthetic process IEP HCCA
BP GO:0042364 water-soluble vitamin biosynthetic process IEP HCCA
BP GO:0042723 thiamine-containing compound metabolic process IEP HCCA
BP GO:0042724 thiamine-containing compound biosynthetic process IEP HCCA
BP GO:0044272 sulfur compound biosynthetic process IEP HCCA
BP GO:0046165 alcohol biosynthetic process IEP HCCA
MF GO:0050661 NADP binding IEP HCCA
MF GO:0050997 quaternary ammonium group binding IEP HCCA
BP GO:0072527 pyrimidine-containing compound metabolic process IEP HCCA
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
BP GO:1901615 organic hydroxy compound metabolic process IEP HCCA
BP GO:1901617 organic hydroxy compound biosynthetic process IEP HCCA
MF GO:1901681 sulfur compound binding IEP HCCA
InterPro domains Description Start Stop
IPR015413 Methionyl/Leucyl_tRNA_Synth 127 259
IPR002300 aa-tRNA-synth_Ia 733 760
IPR025709 Leu_tRNA-synth_edit 308 502
IPR013155 M/V/L/I-tRNA-synth_anticd-bd 818 931
No external refs found!