AMTR_s00092p00127820 (PMH2, ATRH53,...)

Aliases : PMH2, ATRH53, evm_27.TU.AmTr_v1.0_scaffold00092.91

Description : RNA processing.organelle machineries.RNA splicing.mitochondrial RNA splicing.group-II intron splicing.PMH RNA helicase

Gene families : OG0000466 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000466_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00092p00127820

Target	Alias	Description	ECC score	Gene Family Method
AT3G22330	PMH2, ATRH53	putative mitochondrial RNA helicase 2	0.05	OrthoFinder output from all 47 species
AT5G62190	PRH75	DEAD box RNA helicase (PRH75)	0.05	OrthoFinder output from all 47 species
Adi_g086708	emb1138	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g107957	PRH75	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g06747	emb1138	group-II intron splicing RNA helicase *(PMH) & original...	0.02	OrthoFinder output from all 47 species
Ala_g14243	PRH75	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Als_g01062	PRH75	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Als_g14234	PRH75	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g09620	PRH75	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g15554	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.03	OrthoFinder output from all 47 species
Aop_g01355	PRH75	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g04482	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.02	OrthoFinder output from all 47 species
Aop_g08480	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.03	OrthoFinder output from all 47 species
Aop_g18513	PRH75	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g11616	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.02	OrthoFinder output from all 47 species
Cba_g36237	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.03	OrthoFinder output from all 47 species
Ceric.21G051700.1	emb1138, Ceric.21G051700	group-II intron splicing RNA helicase *(RH3) & original...	0.03	OrthoFinder output from all 47 species
Cre02.g118300	PRH75	DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa...	0.01	OrthoFinder output from all 47 species
Dac_g01008	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.03	OrthoFinder output from all 47 species
Dac_g02286	PRH75	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g21286	emb1138	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g00876	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.02	OrthoFinder output from all 47 species
Dde_g09784	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.02	OrthoFinder output from all 47 species
Ehy_g15362	emb1138	group-II intron splicing RNA helicase *(PMH) & original...	0.05	OrthoFinder output from all 47 species
Ehy_g21458	PRH75	not classified & original description: none	0.04	OrthoFinder output from all 47 species
GSVIVT01000821001	PMH2, ATRH53	RNA processing.organelle machineries.RNA...	0.04	OrthoFinder output from all 47 species
LOC_Os12g41715.1	PMH2, ATRH53,...	RNA helicase (PMH)	0.03	OrthoFinder output from all 47 species
Len_g55591	PRH75	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Lfl_g06681	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.04	OrthoFinder output from all 47 species
Lfl_g22117	PRH75	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Lfl_g38604	PRH75	not classified & original description: none	0.05	OrthoFinder output from all 47 species
MA_10206082g0010	PMH2, ATRH53	RNA helicase (PMH)	0.06	OrthoFinder output from all 47 species
MA_17924g0010	PRH75	DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa...	0.03	OrthoFinder output from all 47 species
Mp3g17170.1	emb1138	RH3 plastidial RNA basal splicing factor. RNA helicase (PMH)	0.03	OrthoFinder output from all 47 species
Msp_g13082	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.03	OrthoFinder output from all 47 species
Nbi_g02348	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.02	OrthoFinder output from all 47 species
Nbi_g06285	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.02	OrthoFinder output from all 47 species
Ore_g07399	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.05	OrthoFinder output from all 47 species
Ore_g10670	PRH75	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g38810	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g03917	PRH75	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ppi_g07582	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0281.g027107	PRH75	not classified & original description: CDS=248-2341	0.03	OrthoFinder output from all 47 species
Sam_g09733	No alias	group-II intron splicing RNA helicase *(RH3) & original...	0.02	OrthoFinder output from all 47 species
Solyc03g007010.4.1	PRH75, Solyc03g007010	DEAD-box ATP-dependent RNA helicase 7 OS=Spinacia...	0.02	OrthoFinder output from all 47 species
Solyc07g044760.3.1	PMH2, ATRH53,...	RNA helicase (PMH)	0.03	OrthoFinder output from all 47 species
Spa_g18181	PRH75	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Tin_g08271	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.02	OrthoFinder output from all 47 species
Tin_g13858	PRH75	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g39635	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.02	OrthoFinder output from all 47 species
Zm00001e003219_P001	PMH2, ATRH53,...	RNA helicase (PMH)	0.02	OrthoFinder output from all 47 species
Zm00001e011716_P001	emb1138, Zm00001e011716	RH3 plastidial RNA basal splicing factor	0.03	OrthoFinder output from all 47 species
Zm00001e018107_P001	PMH2, ATRH53,...	RNA helicase (PMH)	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000049	tRNA binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003743	translation initiation factor activity	IEP	HCCA
MF	GO:0003746	translation elongation factor activity	IEP	HCCA
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	HCCA
CC	GO:0005575	cellular_component	IEP	HCCA
CC	GO:0005694	chromosome	IEP	HCCA
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	HCCA
CC	GO:0005853	eukaryotic translation elongation factor 1 complex	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006413	translational initiation	IEP	HCCA
BP	GO:0006414	translational elongation	IEP	HCCA
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
MF	GO:0008270	zinc ion binding	IEP	HCCA
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	HCCA
MF	GO:0031369	translation initiation factor binding	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
BP	GO:0043038	amino acid activation	IEP	HCCA
BP	GO:0043039	tRNA aminoacylation	IEP	HCCA
BP	GO:0044237	cellular metabolic process	IEP	HCCA
BP	GO:0044260	cellular macromolecule metabolic process	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	373	445
IPR011545	DEAD/DEAH_box_helicase_dom	131	297

External Links

No external refs found!

AMTR_s00092p00127820 (PMH2, ATRH53,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation