AMTR_s00061p00213120 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00061.265

Description : Cell cycle.mitosis and meiosis.sister chromatid separation.cohesin establishment.PDS5 cohesin cofactor


Gene families : OG0000616 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000616_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00061p00213120
Cluster HCCA: Cluster_92

Target Alias Description ECC score Gene Family Method Actions
AT1G15940 No alias Tudor/PWWP/MBT superfamily protein 0.02 OrthoFinder output from all 47 species
AT1G77600 No alias ARM repeat superfamily protein 0.04 OrthoFinder output from all 47 species
Adi_g019469 No alias cohesin cofactor *(PDS5) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g022401 No alias cohesin cofactor *(PDS5) & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g06778 No alias cohesin cofactor *(PDS5) & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g18795 No alias cohesin cofactor *(PDS5) & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g32765 No alias cohesin cofactor *(PDS5) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g11522 No alias cohesin cofactor *(PDS5) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g24101 No alias cohesin cofactor *(PDS5) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g03900 No alias cohesin cofactor *(PDS5) & original description: none 0.04 OrthoFinder output from all 47 species
Als_g62298 No alias cohesin cofactor *(PDS5) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g07435 No alias cohesin cofactor *(PDS5) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.34G009800.1 Ceric.34G009800 cohesin cofactor *(PDS5) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.37G021700.1 Ceric.37G021700 cohesin cofactor *(PDS5) & original description:... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000076.96 No alias No description available 0.01 OrthoFinder output from all 47 species
Dcu_g14818 No alias cohesin cofactor *(PDS5) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g09843 No alias cohesin cofactor *(PDS5) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01002824001 No alias No description available 0.03 OrthoFinder output from all 47 species
GSVIVT01023587001 No alias Cell cycle.mitosis and meiosis.sister chromatid... 0.05 OrthoFinder output from all 47 species
GSVIVT01035890001 No alias Cell cycle.mitosis and meiosis.sister chromatid... 0.04 OrthoFinder output from all 47 species
Gb_09525 No alias cohesin cofactor (PDS5) 0.03 OrthoFinder output from all 47 species
LOC_Os04g25960.1 LOC_Os04g25960 cohesin cofactor (PDS5) 0.01 OrthoFinder output from all 47 species
Len_g21353 No alias cohesin cofactor *(PDS5) & original description: none 0.02 OrthoFinder output from all 47 species
Len_g46602 No alias cohesin cofactor *(PDS5) & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g09667 No alias cohesin cofactor *(PDS5) & original description: none 0.03 OrthoFinder output from all 47 species
MA_10434055g0010 No alias cohesin cofactor (PDS5) 0.02 OrthoFinder output from all 47 species
Nbi_g18971 No alias cohesin cofactor *(PDS5) & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g28747 No alias cohesin cofactor *(PDS5) & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g04827 No alias cohesin cofactor *(PDS5) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g22700 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Pir_g14289 No alias cohesin cofactor *(PDS5) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g16328 No alias cohesin cofactor *(PDS5) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g20541 No alias cohesin cofactor *(PDS5) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g57308 No alias cohesin cofactor *(PDS5) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g59813 No alias cohesin cofactor *(PDS5) & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0038.g011973 No alias cohesin cofactor *(PDS5) & original description: CDS=154-4911 0.02 OrthoFinder output from all 47 species
Sam_g18046 No alias cohesin cofactor *(PDS5) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g34184 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g35729 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g36827 No alias cohesin cofactor *(PDS5) & original description: none 0.02 OrthoFinder output from all 47 species
Solyc06g060380.3.1 Solyc06g060380 cohesin cofactor (PDS5) 0.02 OrthoFinder output from all 47 species
Solyc06g065710.3.1 Solyc06g065710 cohesin cofactor (PDS5) 0.04 OrthoFinder output from all 47 species
Solyc11g012770.2.1 Solyc11g012770 cohesin cofactor (PDS5) 0.04 OrthoFinder output from all 47 species
Tin_g02194 No alias cohesin cofactor *(PDS5) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g20983 No alias cohesin cofactor *(PDS5) & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e015094_P002 Zm00001e015094 cohesin cofactor (PDS5) 0.03 OrthoFinder output from all 47 species
Zm00001e022962_P003 Zm00001e022962 cohesin cofactor (PDS5) 0.03 OrthoFinder output from all 47 species
Zm00001e030989_P001 Zm00001e030989 cohesin cofactor (PDS5) 0.03 OrthoFinder output from all 47 species
Zm00001e036853_P003 Zm00001e036853 cohesin cofactor (PDS5) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP HCCA
MF GO:0000156 phosphorelay response regulator activity IEP HCCA
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity IEP HCCA
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP HCCA
MF GO:0004134 4-alpha-glucanotransferase activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004345 glucose-6-phosphate dehydrogenase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004673 protein histidine kinase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005516 calmodulin binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0005996 monosaccharide metabolic process IEP HCCA
BP GO:0006006 glucose metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
BP GO:0019318 hexose metabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0050661 NADP binding IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
MF GO:0060089 molecular transducer activity IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140299 small molecule sensor activity IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA

No InterPro domains available for this sequence

No external refs found!