AMTR_s00058p00137050 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00058.101

Description : RNA biosynthesis.transcriptional activation.HB (Homeobox) superfamily.HOX-like transcription factor

Gene families : OG0001590 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001590_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00058p00137050

Target	Alias	Description	ECC score	Gene Family Method
AT5G44180	No alias	Homeodomain-like transcriptional regulator	0.1	OrthoFinder output from all 47 species
Adi_g012033	HB-1	component *(RINGLET/RLT) of ISWI chromatin remodeling...	0.06	OrthoFinder output from all 47 species
Adi_g098478	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aev_g17892	No alias	component *(RINGLET/RLT) of ISWI chromatin remodeling...	0.03	OrthoFinder output from all 47 species
Ala_g02721	No alias	component *(RINGLET/RLT) of ISWI chromatin remodeling...	0.07	OrthoFinder output from all 47 species
Als_g14029	No alias	component *(RINGLET/RLT) of ISWI chromatin remodeling...	0.04	OrthoFinder output from all 47 species
Als_g63176	No alias	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Aob_g21500	No alias	component *(RINGLET/RLT) of ISWI chromatin remodeling...	0.07	OrthoFinder output from all 47 species
Aop_g10630	HB-1	component *(RINGLET/RLT) of ISWI chromatin remodeling...	0.05	OrthoFinder output from all 47 species
Aspi01Gene48323.t1	HB-1, Aspi01Gene48323	component *(RINGLET/RLT) of ISWI chromatin remodeling...	0.05	OrthoFinder output from all 47 species
Aspi01Gene65117.t1	Aspi01Gene65117	component *(RINGLET/RLT) of ISWI chromatin remodeling...	0.04	OrthoFinder output from all 47 species
Azfi_s0032.g024736	HB-1	component *(RINGLET/RLT) of ISWI chromatin remodeling...	0.03	OrthoFinder output from all 47 species
Azfi_s0575.g078069	HB-1	component *(RINGLET/RLT) of ISWI chromatin remodeling...	0.04	OrthoFinder output from all 47 species
Cba_g05343	No alias	component *(RINGLET/RLT) of ISWI chromatin remodeling...	0.02	OrthoFinder output from all 47 species
Ceric.16G048200.1	HB-1, Ceric.16G048200	component *(RINGLET/RLT) of ISWI chromatin remodeling...	0.1	OrthoFinder output from all 47 species
Ceric.38G016400.1	Ceric.38G016400	component *(RINGLET/RLT) of ISWI chromatin remodeling...	0.07	OrthoFinder output from all 47 species
Cre03.g174500	No alias	Homeobox-DDT domain protein RLT1 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Dcu_g48258	HB-1	component *(RINGLET/RLT) of ISWI chromatin remodeling...	0.04	OrthoFinder output from all 47 species
Ehy_g16445	No alias	component *(RINGLET/RLT) of ISWI chromatin remodeling...	0.04	OrthoFinder output from all 47 species
Ehy_g30736	No alias	component *(RINGLET/RLT) of ISWI chromatin remodeling...	0.03	OrthoFinder output from all 47 species
GSVIVT01020605001	No alias	RNA biosynthesis.transcriptional activation.HB...	0.13	OrthoFinder output from all 47 species
GSVIVT01021113001	HB-1	RNA biosynthesis.transcriptional activation.HB...	0.08	OrthoFinder output from all 47 species
LOC_Os01g48180.1	LOC_Os01g48180	HOX-like transcription factor	0.02	OrthoFinder output from all 47 species
LOC_Os05g48820.1	LOC_Os05g48820	HOX-like transcription factor	0.07	OrthoFinder output from all 47 species
Len_g09041	HB-1	component *(RINGLET/RLT) of ISWI chromatin remodeling...	0.02	OrthoFinder output from all 47 species
Lfl_g10310	No alias	component *(RINGLET/RLT) of ISWI chromatin remodeling...	0.05	OrthoFinder output from all 47 species
MA_2434g0010	No alias	HOX-like transcription factor	0.07	OrthoFinder output from all 47 species
Mp1g04480.1	No alias	HOX-like transcription factor	0.02	OrthoFinder output from all 47 species
Msp_g47810	HB-1	component *(RINGLET/RLT) of ISWI chromatin remodeling...	0.03	OrthoFinder output from all 47 species
Sam_g25993	No alias	component *(RINGLET/RLT) of ISWI chromatin remodeling...	0.04	OrthoFinder output from all 47 species
Sam_g29222	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g50552	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Solyc02g077660.3.1	HB-1, Solyc02g077660	HOX-like transcription factor	0.04	OrthoFinder output from all 47 species
Solyc07g053610.3.1	Solyc07g053610	HOX-like transcription factor	0.05	OrthoFinder output from all 47 species
Spa_g08425	No alias	component *(RINGLET/RLT) of ISWI chromatin remodeling...	0.04	OrthoFinder output from all 47 species
Zm00001e026524_P003	Zm00001e026524	HOX-like transcription factor	0.02	OrthoFinder output from all 47 species
Zm00001e028032_P001	Zm00001e028032	HOX-like transcription factor	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003779	actin binding	IEP	HCCA
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
CC	GO:0005575	cellular_component	IEP	HCCA
CC	GO:0005643	nuclear pore	IEP	HCCA
BP	GO:0006606	protein import into nucleus	IEP	HCCA
BP	GO:0006810	transport	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
BP	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport	IEP	HCCA
BP	GO:0006913	nucleocytoplasmic transport	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0007010	cytoskeleton organization	IEP	HCCA
MF	GO:0008092	cytoskeletal protein binding	IEP	HCCA
BP	GO:0008104	protein localization	IEP	HCCA
MF	GO:0008270	zinc ion binding	IEP	HCCA
BP	GO:0009966	regulation of signal transduction	IEP	HCCA
BP	GO:0009987	cellular process	IEP	HCCA
BP	GO:0010646	regulation of cell communication	IEP	HCCA
BP	GO:0015031	protein transport	IEP	HCCA
BP	GO:0016192	vesicle-mediated transport	IEP	HCCA
MF	GO:0019787	ubiquitin-like protein transferase activity	IEP	HCCA
BP	GO:0023051	regulation of signaling	IEP	HCCA
CC	GO:0030117	membrane coat	IEP	HCCA
CC	GO:0030120	vesicle coat	IEP	HCCA
CC	GO:0030127	COPII vesicle coat	IEP	HCCA
BP	GO:0032012	regulation of ARF protein signal transduction	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
BP	GO:0033036	macromolecule localization	IEP	HCCA
BP	GO:0033365	protein localization to organelle	IEP	HCCA
BP	GO:0034504	protein localization to nucleus	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
BP	GO:0045184	establishment of protein localization	IEP	HCCA
BP	GO:0046578	regulation of Ras protein signal transduction	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
MF	GO:0046914	transition metal ion binding	IEP	HCCA
BP	GO:0048193	Golgi vesicle transport	IEP	HCCA
BP	GO:0048583	regulation of response to stimulus	IEP	HCCA
BP	GO:0051056	regulation of small GTPase mediated signal transduction	IEP	HCCA
BP	GO:0051169	nuclear transport	IEP	HCCA
BP	GO:0051170	import into nucleus	IEP	HCCA
BP	GO:0051179	localization	IEP	HCCA
BP	GO:0051234	establishment of localization	IEP	HCCA
BP	GO:0051641	cellular localization	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA
BP	GO:0070727	cellular macromolecule localization	IEP	HCCA
BP	GO:0071702	organic substance transport	IEP	HCCA
BP	GO:0071705	nitrogen compound transport	IEP	HCCA
BP	GO:0072594	establishment of protein localization to organelle	IEP	HCCA
CC	GO:0098796	membrane protein complex	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA
BP	GO:1902531	regulation of intracellular signal transduction	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001356	Homeobox_dom	17	71

External Links

No external refs found!

AMTR_s00058p00137050 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation