Sequence Description Alias PCC hrr AMTR_s00041p00031550 Vesicle trafficking.Coat protein I (COPI) coatomer machinery.ARF-GTPase guanyl-nucleotide exchange factor (ARF-GEF) activities.BIG-type ARF-GEF factor evm_27.TU.AmTr_v1.0_scaffold00041.15 0.9379194459425756 1 AMTR_s00041p00123630 RNA processing.RNA quality control Exon Junction complex (EJC).peripheral components.UPF2 component evm_27.TU.AmTr_v1.0_scaffold00041.92 0.930128726900433 11 AMTR_s00061p00204480 Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.HECT E3 monomeric ligase UPL1 0.9231923210512916 13 AMTR_s00012p00217710 RNA processing.RNA decay.deadenylation-dependent mechanism.mRNA deadenylation.CCR4-NOT complex.NOT3/5 component evm_27.TU.AmTr_v1.0_scaffold00012.161 0.9217550933787724 26 AMTR_s00068p00177220 Protein modification.phosphorylation.CMGC kinase superfamily.cyclin-dependent kinase families.CDK9 kinase evm_27.TU.AmTr_v1.0_scaffold00068.133 0.9188819184709123 20 AMTR_s00077p00082680 RNA biosynthesis.transcriptional activation.B3 superfamily.LAV-VAL transcription factor HSL1, VAL2, HSI2-L1, evm_27.TU.AmTr_v1.0_scaffold00077.66 0.9180514982084786 8 AMTR_s00004p00267320 Vesicle trafficking.target membrane tethering.DSL1 (Depends-on-SLY1) complex.MIP2 component evm_27.TU.AmTr_v1.0_scaffold00004.268 0.9159450467756202 83 AMTR_s00028p00193460 Phytohormones.cytokinin.perception and signal transduction.AHK-type receptor AHK2, HK2, evm_27.TU.AmTr_v1.0_scaffold00028.85 0.9146600528809472 42 AMTR_s00024p00121650 Protein modification.phosphorylation.CMGC kinase superfamily.DYRK kinase evm_27.TU.AmTr_v1.0_scaffold00024.71 0.9128571528430646 56 AMTR_s00004p00140970 Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana UBP13, evm_27.TU.AmTr_v1.0_scaffold00004.137 0.9117447970524408 78 AMTR_s00007p00263470 COP1-interacting protein 7 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00007.340 0.9113463464788888 26 AMTR_s00019p00148170 Vesicle trafficking.Coat protein II (COPII) coatomer machinery.Sec16 Sar1-GTPase-regulating protein evm_27.TU.AmTr_v1.0_scaffold00019.136 0.9099341588657205 44 AMTR_s00065p00174980 Cell cycle.mitosis and meiosis.sister chromatid separation.cohesin establishment.PDS5 cohesin cofactor evm_27.TU.AmTr_v1.0_scaffold00065.145 0.909582610594491 51 AMTR_s00066p00089100 SUPPRESSOR OF ABI3-5 OS=Arabidopsis thaliana SUA, evm_27.TU.AmTr_v1.0_scaffold00066.69 0.9088544745481402 84 AMTR_s00033p00059780 Protein modification.lipidation.Cys-linked S-acylation.protein S-acyltransferase TIP1, evm_27.TU.AmTr_v1.0_scaffold00033.26 0.9079537406780023 28 AMTR_s00148p00040560 evm_27.TU.AmTr_v1.0_scaffold00148.20 0.9073979894651873 96 AMTR_s00077p00124730 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).nuclear basket.NUA nucleoporin NUA, AtTPR, evm_27.TU.AmTr_v1.0_scaffold00077.118 0.9048916159768625 18 AMTR_s00002p00250180 RNA biosynthesis.RNA polymerase II-dependent transcription.SPT4/5 transcription elongation factor complex.SPT5 component GTA02, GTA2, evm_27.TU.AmTr_v1.0_scaffold00002.351 0.9038380404348016 19 AMTR_s00090p00148990 Chromatin organisation.chromatin remodeling complexes.ATPase core components.Snf2-like group.Snf2 chromatin remodeling factor SYD, CHR3, evm_27.TU.AmTr_v1.0_scaffold00090.83 0.9027377478510903 20 AMTR_s00066p00174610 Cell cycle.mitosis and meiosis.sister chromatid separation.cohesin regulator complex.SCC1 mitotic-specific Kleisin-type component ATRAD21.3, SYN4, evm_27.TU.AmTr_v1.0_scaffold00066.206 0.901379731601838 49 AMTR_s00061p00084390 Vesicle trafficking.Coat protein II (COPII) coatomer machinery.coat protein complex.Sec23/24 cargo adaptor subcomplex.Sec24 component evm_27.TU.AmTr_v1.0_scaffold00061.60 0.8995047062410528 26 AMTR_s00017p00130610 DDB1- and CUL4-associated factor homolog 1 OS=Arabidopsis thaliana DCAF1, evm_27.TU.AmTr_v1.0_scaffold00017.53 0.8989572011473496 24 AMTR_s00047p00208850 Cell cycle.mitosis and meiosis.sister chromatid separation.cohesin regulator complex.SMC1/TTN8 component TTN8, ATSMC1, SMC1, evm_27.TU.AmTr_v1.0_scaffold00047.148 0.8976783773455271 70 AMTR_s00117p00120670 Vesicle trafficking.endomembrane trafficking.vacuolar sorting.AP-4 vacuole cargo adaptor complex.AP4E large epsilon subunit evm_27.TU.AmTr_v1.0_scaffold00117.50 0.8965307245533368 27 AMTR_s00025p00248490 Cytoskeleton.microfilament network.actin polymerisation.villin actin-crosslinking factor ATVLN2, VLN2, evm_27.TU.AmTr_v1.0_scaffold00025.405 0.8960899928829702 29 AMTR_s00099p00149450 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.methionine.S-methylmethionine cycle.methionine S-methyltransferase MMT, evm_27.TU.AmTr_v1.0_scaffold00099.136 0.8931152827400765 31 AMTR_s00028p00239280 Chitin elicitor receptor kinase 1 OS=Oryza sativa subsp. japonica CERK1, LYSM RLK1, evm_27.TU.AmTr_v1.0_scaffold00028.127 0.8929557033128438 32 AMTR_s00007p00065880 Lipid metabolism.lipid degradation.phospholipase activities.phospholipase C activities.PI-PLC-type phospholipase C evm_27.TU.AmTr_v1.0_scaffold00007.34 0.8922160679727124 37 AMTR_s00009p00267690 Protein modification.dephosphorylation.aspartate-based protein phosphatase superfamily.FCP phosphatase families.CPL1/2 phosphatase ATCPL1, CPL1, FRY2, evm_27.TU.AmTr_v1.0_scaffold00009.409 0.8918233024613126 80 AMTR_s00111p00041460 Protein biosynthesis.translation initiation.pre-initiation complex (PIC).eIF3 mRNA-to-PIC binding complex.eIF3a component ATTIF3A1, ATEIF3A-1, EIF3A-1, TIF3A1, EIF3A, evm_27.TU.AmTr_v1.0_scaffold00111.21 0.8911913350322667 96 AMTR_s00069p00185250 BEACH domain-containing protein C2 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00069.184 0.8901536020475048 42 AMTR_s00002p00140630 Protein biosynthesis.translation initiation.mRNA loading.eIF4F mRNA unwinding complex.eIF4G component CUM2, EIF4G, evm_27.TU.AmTr_v1.0_scaffold00002.103 0.8896640676830299 44 AMTR_s00038p00121420 Phytohormones.abscisic acid.perception and signalling.signal transducer (KEG) KEG, evm_27.TU.AmTr_v1.0_scaffold00038.67 0.888582116033291 46 AMTR_s00032p00061960 Protein modification.phosphorylation.CMGC kinase superfamily.cyclin-dependent kinase families.CDKC kinase CDKC;1, evm_27.TU.AmTr_v1.0_scaffold00032.39 0.8878361986383823 48 AMTR_s00013p00152000 DnaJ homolog subfamily C GRV2 OS=Arabidopsis thaliana GRV2, KAM2, evm_27.TU.AmTr_v1.0_scaffold00013.78 0.8875153148201024 98 AMTR_s00007p00168430 Vesicle trafficking.clathrin coated vesicle (CCV) machinery.clathrin triskelion.heavy chain 0.8873266262133105 51 AMTR_s00004p00092300 RNA biosynthesis.RNA polymerase III-dependent transcription.TFIIIb transcription factor complex.BRF1 component evm_27.TU.AmTr_v1.0_scaffold00004.75 0.8870881690745902 58 AMTR_s00022p00245030 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol I catalytic subunits.subunit 1 NRPA1, evm_27.TU.AmTr_v1.0_scaffold00022.362 0.8868544551598877 91 AMTR_s00154p00087040 evm_27.TU.AmTr_v1.0_scaffold00154.57 0.8849051735455782 57 AMTR_s00268p00016240 Protein modification.phosphorylation.atypical kinase families.PIKK kinase evm_27.TU.AmTr_v1.0_scaffold00268.6 0.8847703706535629 76 AMTR_s00682p00010920 Chromatin organisation.histone chaperone activities.FACT histone chaperone complex.SPT16 component SPT16, evm_27.TU.AmTr_v1.0_scaffold00682.1 0.8846961607829027 94 AMTR_s00025p00184490 evm_27.TU.AmTr_v1.0_scaffold00025.223 0.8841992740063489 60 AMTR_s00146p00059560 Cytoskeleton.microfilament network.myosin microfilament-based motor protein activities.class XI myosin ATXIK, XI-17, XIK, evm_27.TU.AmTr_v1.0_scaffold00146.36 0.8831891605738675 62 AMTR_s00099p00102890 Zinc finger CCCH domain-containing protein 5 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00099.84 0.8830311887695346 63 AMTR_s00057p00203610 evm_27.TU.AmTr_v1.0_scaffold00057.240 0.883019769115971 64 AMTR_s00009p00114640 RNA biosynthesis.transcriptional activation.JUMONJI transcription factor ELF6, evm_27.TU.AmTr_v1.0_scaffold00009.56 0.8828788277154016 74 AMTR_s00001p00152770 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol II catalytic subunits.subunit 1 RNA_POL_II_LSRNA_POL_II_LS, NRPB1, RPB1, RNA_POL_II_LS, evm_27.TU.AmTr_v1.0_scaffold00001.137 0.8826245642248829 67 AMTR_s00040p00228310 Vesicle trafficking.clathrin coated vesicle (CCV) machinery.AP-2 cargo adaptor complex.AP2A large alpha subunit alpha-ADR, evm_27.TU.AmTr_v1.0_scaffold00040.272 0.882246561542784 78 AMTR_s00080p00131040 Protein modification.phosphorylation.TKL kinase superfamily.L-lectin kinase HERK1, evm_27.TU.AmTr_v1.0_scaffold00080.56 0.8822117341023773 71 AMTR_s00027p00080950 Vesicle trafficking.regulation of membrane tethering and fusion.RAB-GTPase-activating protein (RAB-GAP) evm_27.TU.AmTr_v1.0_scaffold00027.25 0.8807436191544112 75 AMTR_s00022p00114710 RNA processing.RNA splicing.spliceosome assembly/disassembly.RNA helicase activities.Brr2 RNA helicase emb1507, evm_27.TU.AmTr_v1.0_scaffold00022.105 0.8798197491697073 80 AMTR_s00079p00078710 RNA biosynthesis.transcriptional activation.TAZ histone acetylase transcription factor ATHPCAT2, HAC1, ATHAC1, PCAT2, evm_27.TU.AmTr_v1.0_scaffold00079.26 0.8793037203956343 81 AMTR_s00027p00205150 Protein modification.phosphorylation.STE kinase superfamily.MAP4K kinase evm_27.TU.AmTr_v1.0_scaffold00027.73 0.8789943898803889 91 AMTR_s00002p00187140 Elongation factor 1-alpha 1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00002.164 0.8786374399979809 84 AMTR_s00016p00200180 Probable protein S-acyltransferase 7 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00016.167 0.8772006980485476 88 AMTR_s00029p00079800 RNA biosynthesis.transcriptional activation.HUA2 transcription factor HUA2, evm_27.TU.AmTr_v1.0_scaffold00029.74 0.8763865294095949 93 AMTR_s00078p00181940 Protein modification.phosphorylation.CK kinase superfamily.MLK protein kinase evm_27.TU.AmTr_v1.0_scaffold00078.179 0.8757312172372834 96 AMTR_s00037p00154410 Cell wall.cell wall proteins.hydroxyproline-rich glycoproteins.arabinogalactan proteins (AGPs).glycosylation.AGP beta-1,3-galactosyltransferase evm_27.TU.AmTr_v1.0_scaffold00037.71 0.8742523009256504 99