AMTR_s00048p00223180 (ATSRS, OVA7, SRS,...)

Aliases : ATSRS, OVA7, SRS, evm_27.TU.AmTr_v1.0_scaffold00048.210

Description : Protein biosynthesis.aminoacyl-tRNA synthetase activities.serine-tRNA ligase

Gene families : OG0005873 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005873_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00048p00223180
Cluster	HCCA: Cluster_101

Target	Alias	Description	ECC score	Gene Family Method
AT1G11870	ATSRS, OVA7, SRS	Seryl-tRNA synthetase	0.05	OrthoFinder output from all 47 species
Adi_g087565	ATSRS, OVA7, SRS	serine-tRNA ligase & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g00718	ATSRS, OVA7, SRS	serine-tRNA ligase & original description: none	0.04	OrthoFinder output from all 47 species
Cba_g30537	ATSRS, OVA7, SRS	serine-tRNA ligase & original description: none	0.04	OrthoFinder output from all 47 species
Ceric.30G073100.1	ATSRS, OVA7,...	serine-tRNA ligase & original description:...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001094.6	ATSRS, OVA7, SRS	Protein biosynthesis.aminoacyl-tRNA synthetase...	0.01	OrthoFinder output from all 47 species
Cre02.g082877	ATSRS, OVA7, SRS	Protein biosynthesis.aminoacyl-tRNA synthetase...	0.06	OrthoFinder output from all 47 species
Dac_g13374	ATSRS, OVA7, SRS	serine-tRNA ligase & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g10674	ATSRS, OVA7, SRS	serine-tRNA ligase & original description: none	0.05	OrthoFinder output from all 47 species
Dde_g12045	ATSRS, OVA7, SRS	serine-tRNA ligase & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g01271	ATSRS, OVA7, SRS	serine-tRNA ligase & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01004302001	ATSRS, OVA7, SRS	Serine--tRNA ligase, chloroplastic/mitochondrial...	0.04	OrthoFinder output from all 47 species
Gb_15950	ATSRS, OVA7, SRS	serine-tRNA ligase	0.03	OrthoFinder output from all 47 species
Len_g03318	ATSRS, OVA7, SRS	serine-tRNA ligase & original description: none	0.02	OrthoFinder output from all 47 species
Len_g54665	ATSRS, OVA7, SRS	serine-tRNA ligase & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g01679	ATSRS, OVA7, SRS	serine-tRNA ligase & original description: none	0.04	OrthoFinder output from all 47 species
MA_10434176g0010	ATSRS, OVA7, SRS	Serine--tRNA ligase, chloroplastic/mitochondrial...	0.04	OrthoFinder output from all 47 species
Mp6g09660.1	ATSRS, OVA7, SRS	serine-tRNA ligase	0.06	OrthoFinder output from all 47 species
Msp_g44473	ATSRS, OVA7, SRS	serine-tRNA ligase & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g15821	ATSRS, OVA7, SRS	serine-tRNA ligase & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g08302	ATSRS, OVA7, SRS	serine-tRNA ligase & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g33713	ATSRS, OVA7, SRS	serine-tRNA ligase & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0136.g022415	ATSRS, OVA7, SRS	serine-tRNA ligase & original description: CDS=154-1713	0.02	OrthoFinder output from all 47 species
Solyc04g074630.4.1	ATSRS, OVA7,...	serine-tRNA ligase	0.1	OrthoFinder output from all 47 species
Spa_g07838	ATSRS, OVA7, SRS	serine-tRNA ligase & original description: none	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEA	Interproscan
MF	GO:0004828	serine-tRNA ligase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	IEA	Interproscan
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006418	tRNA aminoacylation for protein translation	IEA	Interproscan
BP	GO:0006434	seryl-tRNA aminoacylation	IEA	Interproscan
BP	GO:0006520	amino acid metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016874	ligase activity	None	Extended
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0043038	amino acid activation	None	Extended
BP	GO:0043039	tRNA aminoacylation	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140101	catalytic activity, acting on a tRNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003747	translation release factor activity	IEP	HCCA
MF	GO:0003856	3-dehydroquinate synthase activity	IEP	HCCA
MF	GO:0004556	alpha-amylase activity	IEP	HCCA
MF	GO:0004659	prenyltransferase activity	IEP	HCCA
MF	GO:0004853	uroporphyrinogen decarboxylase activity	IEP	HCCA
BP	GO:0006415	translational termination	IEP	HCCA
BP	GO:0006778	porphyrin-containing compound metabolic process	IEP	HCCA
BP	GO:0006779	porphyrin-containing compound biosynthetic process	IEP	HCCA
BP	GO:0008033	tRNA processing	IEP	HCCA
MF	GO:0008079	translation termination factor activity	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
BP	GO:0009072	aromatic amino acid metabolic process	IEP	HCCA
BP	GO:0009073	aromatic amino acid family biosynthetic process	IEP	HCCA
MF	GO:0009975	cyclase activity	IEP	HCCA
MF	GO:0009976	tocopherol cyclase activity	IEP	HCCA
MF	GO:0016149	translation release factor activity, codon specific	IEP	HCCA
MF	GO:0016160	amylase activity	IEP	HCCA
MF	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups	IEP	HCCA
MF	GO:0016829	lyase activity	IEP	HCCA
MF	GO:0016831	carboxy-lyase activity	IEP	HCCA
MF	GO:0016838	carbon-oxygen lyase activity, acting on phosphates	IEP	HCCA
BP	GO:0019438	aromatic compound biosynthetic process	IEP	HCCA
BP	GO:0022411	cellular component disassembly	IEP	HCCA
BP	GO:0032984	protein-containing complex disassembly	IEP	HCCA
BP	GO:0033013	tetrapyrrole metabolic process	IEP	HCCA
BP	GO:0033014	tetrapyrrole biosynthetic process	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
MF	GO:0050660	flavin adenine dinucleotide binding	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	HCCA
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR015866	Ser-tRNA-synth_1_N	76	180
IPR002314	aa-tRNA-synt_IIb	245	413

External Links

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AMTR_s00048p00223180 (ATSRS, OVA7, SRS,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation