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Aliases : evm_27.TU.AmTr_v1.0_scaffold00048.89
Description : Pentatricopeptide repeat-containing protein At5g01110 OS=Arabidopsis thaliana
Gene families : OG0002597 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002597_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00019p00203030 | evm_27.TU.AmTr_v1... | Putative pentatricopeptide repeat-containing protein... | 0.03 | OrthoFinder output from all 47 species | |
| AMTR_s00059p00156460 | evm_27.TU.AmTr_v1... | Putative pentatricopeptide repeat-containing protein... | 0.05 | OrthoFinder output from all 47 species | |
| AMTR_s00077p00196020 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At5g40400... | 0.04 | OrthoFinder output from all 47 species | |
| AT1G11710 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | OrthoFinder output from all 47 species | |
| AT5G59900 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01009638001 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01010244001 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01018339001 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01025017001 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01031237001 | No alias | Pentatricopeptide repeat-containing protein At1g09820... | 0.03 | OrthoFinder output from all 47 species | |
| Gb_01582 | No alias | Pentatricopeptide repeat-containing protein At4g26680,... | 0.04 | OrthoFinder output from all 47 species | |
| Gb_03188 | No alias | Pentatricopeptide repeat-containing protein At2g15630,... | 0.04 | OrthoFinder output from all 47 species | |
| Gb_03214 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.03 | OrthoFinder output from all 47 species | |
| Gb_03521 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.02 | OrthoFinder output from all 47 species | |
| Gb_07698 | No alias | Pentatricopeptide repeat-containing protein At3g54980,... | 0.03 | OrthoFinder output from all 47 species | |
| Gb_08861 | No alias | Pentatricopeptide repeat-containing protein At1g09820... | 0.04 | OrthoFinder output from all 47 species | |
| Gb_13926 | No alias | group-II intron mitochondrial splicing factor (MISF26) | 0.04 | OrthoFinder output from all 47 species | |
| Gb_18022 | No alias | Pentatricopeptide repeat-containing protein At5g01110... | 0.03 | OrthoFinder output from all 47 species | |
| Gb_20239 | No alias | Pentatricopeptide repeat-containing protein At5g40400... | 0.03 | OrthoFinder output from all 47 species | |
| Gb_23453 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.04 | OrthoFinder output from all 47 species | |
| Gb_26765 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.03 | OrthoFinder output from all 47 species | |
| Gb_28619 | No alias | Pentatricopeptide repeat-containing protein At1g11710,... | 0.03 | OrthoFinder output from all 47 species | |
| Gb_29383 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.03 | OrthoFinder output from all 47 species | |
| Gb_30066 | EMB2745 | Pentatricopeptide repeat-containing protein At5g39710... | 0.05 | OrthoFinder output from all 47 species | |
| Gb_30544 | No alias | Pentatricopeptide repeat-containing protein At2g32630... | 0.03 | OrthoFinder output from all 47 species | |
| Gb_41674 | No alias | Pentatricopeptide repeat-containing protein At5g55840... | 0.03 | OrthoFinder output from all 47 species | |
| Gb_41726 | No alias | Pentatricopeptide repeat-containing protein At2g16880... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os05g19390.1 | LOC_Os05g19390 | Putative pentatricopeptide repeat-containing protein... | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os06g36910.1 | LOC_Os06g36910 | Putative pentatricopeptide repeat-containing protein... | 0.03 | OrthoFinder output from all 47 species | |
| MA_111225g0010 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.03 | OrthoFinder output from all 47 species | |
| MA_302333g0010 | No alias | Pentatricopeptide repeat-containing protein At5g55840... | 0.04 | OrthoFinder output from all 47 species | |
| MA_59385g0010 | No alias | Pentatricopeptide repeat-containing protein At3g54980,... | 0.03 | OrthoFinder output from all 47 species | |
| MA_6175g0010 | No alias | Pentatricopeptide repeat-containing protein At5g01110... | 0.03 | OrthoFinder output from all 47 species | |
| MA_64750g0010 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.04 | OrthoFinder output from all 47 species | |
| Solyc01g100450.1.1 | Solyc01g100450 | Pentatricopeptide repeat-containing protein At1g09820... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc02g021270.3.1 | Solyc02g021270 | Putative pentatricopeptide repeat-containing protein... | 0.08 | OrthoFinder output from all 47 species | |
| Solyc05g051340.3.1 | Solyc05g051340 | group-II intron mitochondrial splicing factor (MISF26) | 0.03 | OrthoFinder output from all 47 species | |
| Solyc07g047620.3.1 | Solyc07g047620 | Pentatricopeptide repeat-containing protein At4g26680,... | 0.04 | OrthoFinder output from all 47 species | |
| Solyc11g073270.1.1 | Solyc11g073270 | Putative pentatricopeptide repeat-containing protein... | 0.05 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000075 | cell cycle checkpoint signaling | IEP | HCCA |
| BP | GO:0001522 | pseudouridine synthesis | IEP | HCCA |
| MF | GO:0004222 | metalloendopeptidase activity | IEP | HCCA |
| MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | HCCA |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006364 | rRNA processing | IEP | HCCA |
| BP | GO:0006399 | tRNA metabolic process | IEP | HCCA |
| BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | HCCA |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
| BP | GO:0007088 | regulation of mitotic nuclear division | IEP | HCCA |
| BP | GO:0007093 | mitotic cell cycle checkpoint signaling | IEP | HCCA |
| BP | GO:0007094 | mitotic spindle assembly checkpoint signaling | IEP | HCCA |
| BP | GO:0007346 | regulation of mitotic cell cycle | IEP | HCCA |
| MF | GO:0008237 | metallopeptidase activity | IEP | HCCA |
| BP | GO:0009451 | RNA modification | IEP | HCCA |
| MF | GO:0009982 | pseudouridine synthase activity | IEP | HCCA |
| BP | GO:0010564 | regulation of cell cycle process | IEP | HCCA |
| BP | GO:0010639 | negative regulation of organelle organization | IEP | HCCA |
| BP | GO:0010948 | negative regulation of cell cycle process | IEP | HCCA |
| BP | GO:0010965 | regulation of mitotic sister chromatid separation | IEP | HCCA |
| BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
| BP | GO:0016072 | rRNA metabolic process | IEP | HCCA |
| MF | GO:0016866 | intramolecular transferase activity | IEP | HCCA |
| MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | HCCA |
| BP | GO:0022402 | cell cycle process | IEP | HCCA |
| BP | GO:0030071 | regulation of mitotic metaphase/anaphase transition | IEP | HCCA |
| BP | GO:0031577 | spindle checkpoint signaling | IEP | HCCA |
| BP | GO:0033043 | regulation of organelle organization | IEP | HCCA |
| BP | GO:0033044 | regulation of chromosome organization | IEP | HCCA |
| BP | GO:0033045 | regulation of sister chromatid segregation | IEP | HCCA |
| BP | GO:0033046 | negative regulation of sister chromatid segregation | IEP | HCCA |
| BP | GO:0033047 | regulation of mitotic sister chromatid segregation | IEP | HCCA |
| BP | GO:0033048 | negative regulation of mitotic sister chromatid segregation | IEP | HCCA |
| BP | GO:0034470 | ncRNA processing | IEP | HCCA |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
| BP | GO:0035556 | intracellular signal transduction | IEP | HCCA |
| BP | GO:0043038 | amino acid activation | IEP | HCCA |
| BP | GO:0043039 | tRNA aminoacylation | IEP | HCCA |
| BP | GO:0045786 | negative regulation of cell cycle | IEP | HCCA |
| BP | GO:0045839 | negative regulation of mitotic nuclear division | IEP | HCCA |
| BP | GO:0045841 | negative regulation of mitotic metaphase/anaphase transition | IEP | HCCA |
| BP | GO:0045930 | negative regulation of mitotic cell cycle | IEP | HCCA |
| BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
| BP | GO:0048519 | negative regulation of biological process | IEP | HCCA |
| BP | GO:0048523 | negative regulation of cellular process | IEP | HCCA |
| BP | GO:0051128 | regulation of cellular component organization | IEP | HCCA |
| BP | GO:0051129 | negative regulation of cellular component organization | IEP | HCCA |
| BP | GO:0051726 | regulation of cell cycle | IEP | HCCA |
| BP | GO:0051783 | regulation of nuclear division | IEP | HCCA |
| BP | GO:0051784 | negative regulation of nuclear division | IEP | HCCA |
| BP | GO:0051983 | regulation of chromosome segregation | IEP | HCCA |
| BP | GO:0051985 | negative regulation of chromosome segregation | IEP | HCCA |
| BP | GO:0071173 | spindle assembly checkpoint signaling | IEP | HCCA |
| BP | GO:0071174 | mitotic spindle checkpoint signaling | IEP | HCCA |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
| MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | HCCA |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
| BP | GO:1901987 | regulation of cell cycle phase transition | IEP | HCCA |
| BP | GO:1901988 | negative regulation of cell cycle phase transition | IEP | HCCA |
| BP | GO:1901990 | regulation of mitotic cell cycle phase transition | IEP | HCCA |
| BP | GO:1901991 | negative regulation of mitotic cell cycle phase transition | IEP | HCCA |
| BP | GO:1902099 | regulation of metaphase/anaphase transition of cell cycle | IEP | HCCA |
| BP | GO:1902100 | negative regulation of metaphase/anaphase transition of cell cycle | IEP | HCCA |
| BP | GO:1903047 | mitotic cell cycle process | IEP | HCCA |
| BP | GO:1905818 | regulation of chromosome separation | IEP | HCCA |
| BP | GO:1905819 | negative regulation of chromosome separation | IEP | HCCA |
| BP | GO:2000816 | negative regulation of mitotic sister chromatid separation | IEP | HCCA |
| BP | GO:2001251 | negative regulation of chromosome organization | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 574 | 603 |
| IPR002885 | Pentatricopeptide_repeat | 52 | 78 |
| IPR002885 | Pentatricopeptide_repeat | 461 | 493 |
| IPR002885 | Pentatricopeptide_repeat | 147 | 179 |
| IPR002885 | Pentatricopeptide_repeat | 287 | 318 |
| IPR002885 | Pentatricopeptide_repeat | 325 | 374 |
| IPR002885 | Pentatricopeptide_repeat | 501 | 549 |
| IPR002885 | Pentatricopeptide_repeat | 80 | 129 |
| IPR002885 | Pentatricopeptide_repeat | 395 | 444 |
| IPR002885 | Pentatricopeptide_repeat | 185 | 233 |
| No external refs found! |