AMTR_s00048p00075850 (HSFA1B, ATHSF3, HSF3,...)

Aliases : HSFA1B, ATHSF3, HSF3, ATHSFA1B, evm_27.TU.AmTr_v1.0_scaffold00048.34

Description : RNA biosynthesis.transcriptional activation.HSF (heat shock) transcription factor

Gene families : OG0000093 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000093_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00048p00075850

Target	Alias	Description	ECC score	Gene Family Method
Adi_g056671	HSFA1B, ATHSF3,...	transcriptional regulator *(HsfA1) & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g115583	HSFA1B, ATHSF3,...	transcriptional regulator *(HsfA1) & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g115584	HSFA1B, ATHSF3,...	transcriptional regulator *(HsfA1) & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene71625.t1	ATHSF1, HSF1,...	HSF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g06389	HSFB4, SCZ, AT-HSFB4	HSF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g08179	ATHSF1, HSF1,...	transcriptional regulator *(HsfA1) & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.20G059100.1	ATHSF1, HSF1,...	transcriptional regulator *(HsfA1) & original...	0.04	OrthoFinder output from all 47 species
Dcu_g12135	HSFA1B, ATHSF3,...	HSF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g26513	HSFB4, SCZ, AT-HSFB4	HSF-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Gb_15358	HSFA1B, ATHSF3,...	transcription factor (HSF). transcriptional regulator (HsfA1)	0.03	OrthoFinder output from all 47 species
LOC_Os02g29340.1	AT-HSFA5, HSFA5,...	transcription factor (HSF)	0.03	OrthoFinder output from all 47 species
LOC_Os06g22610.1	AT-HSFA7A,...	Heat stress transcription factor A-2a OS=Oryza sativa...	0.01	OrthoFinder output from all 47 species
Lfl_g30505	HSFA1B, ATHSF3,...	HSF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
MA_12808g0010	HSFA1B, ATHSF3,...	transcription factor (HSF)	0.02	OrthoFinder output from all 47 species
Pnu_g20199	HSFB4, SCZ, AT-HSFB4	HSF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Sam_g17174	No alias	transcriptional regulator *(HsfA1) & original description: none	0.04	OrthoFinder output from all 47 species
Solyc02g090820.3.1	HSF4, HSFB1,...	transcription factor (HSF)	0.03	OrthoFinder output from all 47 species
Solyc03g006000.3.1	HSF A4A,...	transcription factor (HSF)	0.03	OrthoFinder output from all 47 species
Solyc08g005170.3.1	ATHSFA1D,...	transcription factor (HSF). transcriptional regulator (HsfA1)	0.02	OrthoFinder output from all 47 species
Solyc12g007070.2.1	AT-HSFC1, HSFC1,...	transcription factor (HSF)	0.01	OrthoFinder output from all 47 species
Solyc12g098520.2.1	AT-HSFA5, HSFA5,...	transcription factor (HSF)	0.02	OrthoFinder output from all 47 species
Zm00001e014583_P001	AT-HSFA5, HSFA5,...	transcription factor (HSF)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003743	translation initiation factor activity	IEP	HCCA
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	HCCA
MF	GO:0004576	oligosaccharyl transferase activity	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0006413	translational initiation	IEP	HCCA
BP	GO:0006479	protein methylation	IEP	HCCA
BP	GO:0006486	protein glycosylation	IEP	HCCA
BP	GO:0006807	nitrogen compound metabolic process	IEP	HCCA
BP	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
MF	GO:0008168	methyltransferase activity	IEP	HCCA
BP	GO:0008213	protein alkylation	IEP	HCCA
MF	GO:0008276	protein methyltransferase activity	IEP	HCCA
BP	GO:0009987	cellular process	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	HCCA
MF	GO:0016859	cis-trans isomerase activity	IEP	HCCA
CC	GO:0030117	membrane coat	IEP	HCCA
CC	GO:0030120	vesicle coat	IEP	HCCA
CC	GO:0030127	COPII vesicle coat	IEP	HCCA
MF	GO:0031369	translation initiation factor binding	IEP	HCCA
BP	GO:0032259	methylation	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0043413	macromolecule glycosylation	IEP	HCCA
BP	GO:0043414	macromolecule methylation	IEP	HCCA
BP	GO:0044237	cellular metabolic process	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
BP	GO:0048193	Golgi vesicle transport	IEP	HCCA
BP	GO:0070085	glycosylation	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000232	HSF_DNA-bd	14	106

External Links

No external refs found!

AMTR_s00048p00075850 (HSFA1B, ATHSF3, HSF3,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation