AMTR_s00031p00234160 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00031.112

Description : Vesicle trafficking.endomembrane trafficking.protein recycling.ubiquitylated cargo adaptors.TOM associated protein

Gene families : OG0000393 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000393_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00031p00234160

Target	Alias	Description	ECC score	Gene Family Method
Aob_g03493	No alias	ubiquitin adaptor protein *(TOL) & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g01820	No alias	ubiquitin adaptor protein *(TOL) & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g58158	No alias	ubiquitin adaptor protein *(TOL) & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g06382	No alias	ubiquitin adaptor protein *(TOL) & original description: none	0.03	OrthoFinder output from all 47 species
LOC_Os08g01740.1	LOC_Os08g01740	TOM endomembrane trafficking associated protein	0.02	OrthoFinder output from all 47 species
Len_g33770	No alias	ubiquitin adaptor protein *(TOL) & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g02099	No alias	ubiquitin adaptor protein *(TOL) & original description: none	0.03	OrthoFinder output from all 47 species	plastid
Msp_g06204	No alias	ubiquitin adaptor protein *(TOL) & original description: none	0.02	OrthoFinder output from all 47 species
Msp_g45551	No alias	ubiquitin adaptor protein *(TOL) & original description: none	0.05	OrthoFinder output from all 47 species
Ore_g02641	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g16343	No alias	ubiquitin adaptor protein *(TOL) & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0002.g000824	No alias	ubiquitin adaptor protein *(TOL) & original description:...	0.03	OrthoFinder output from all 47 species
Sam_g08645	No alias	ubiquitin adaptor protein *(TOL) & original description: none	0.03	OrthoFinder output from all 47 species
Solyc03g097070.3.1	Solyc03g097070	TOM endomembrane trafficking associated protein	0.05	OrthoFinder output from all 47 species
Solyc04g063280.3.1	Solyc04g063280	TOM endomembrane trafficking associated protein	0.04	OrthoFinder output from all 47 species
Solyc09g025240.3.1	Solyc09g025240	TOM endomembrane trafficking associated protein	0.04	OrthoFinder output from all 47 species
Tin_g14065	No alias	ubiquiTin adaptor protein *(TOL) & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e015516_P001	Zm00001e015516	TOM endomembrane trafficking associated protein	0.02	OrthoFinder output from all 47 species
Zm00001e021369_P002	Zm00001e021369	TOM endomembrane trafficking associated protein	0.02	OrthoFinder output from all 47 species
Zm00001e023285_P001	Zm00001e023285	TOM endomembrane trafficking associated protein	0.02	OrthoFinder output from all 47 species
Zm00001e031902_P001	Zm00001e031902	TOM endomembrane trafficking associated protein	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	IEA	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	IEA	Interproscan
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000049	tRNA binding	IEP	HCCA
MF	GO:0004222	metalloendopeptidase activity	IEP	HCCA
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	HCCA
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	HCCA
MF	GO:0008233	peptidase activity	IEP	HCCA
MF	GO:0008237	metallopeptidase activity	IEP	HCCA
BP	GO:0015969	guanosine tetraphosphate metabolic process	IEP	HCCA
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	HCCA
CC	GO:0030117	membrane coat	IEP	HCCA
CC	GO:0030119	AP-type membrane coat adaptor complex	IEP	HCCA
CC	GO:0030131	clathrin adaptor complex	IEP	HCCA
BP	GO:0033865	nucleoside bisphosphate metabolic process	IEP	HCCA
BP	GO:0033875	ribonucleoside bisphosphate metabolic process	IEP	HCCA
BP	GO:0034032	purine nucleoside bisphosphate metabolic process	IEP	HCCA
BP	GO:0034035	purine ribonucleoside bisphosphate metabolic process	IEP	HCCA
BP	GO:0043038	amino acid activation	IEP	HCCA
BP	GO:0043039	tRNA aminoacylation	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002014	VHS_dom	4	134
IPR004152	GAT_dom	186	271

External Links

No external refs found!

AMTR_s00031p00234160 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation