AMTR_s00008p00210700 (GCH, ATGCH, RFD1,...)

Aliases : GCH, ATGCH, RFD1, ATRIBA1, evm_27.TU.AmTr_v1.0_scaffold00008.133

Description : Coenzyme metabolism.FMN/FAD biosynthesis.bifunctional GTP cyclohydrolase II (RibA) and DHBP synthase (RibB)

Gene families : OG0001684 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001684_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00008p00210700

Target	Alias	Description	ECC score	Gene Family Method
AT5G64300	GCH, ATGCH, RFD1, ATRIBA1	GTP cyclohydrolase II	0.04	OrthoFinder output from all 47 species
Adi_g013021	GCH, ATGCH, RFD1, ATRIBA1	EC_3.5 hydrolase acting on carbon-nitrogen bond, other...	0.02	OrthoFinder output from all 47 species
Adi_g023433	GCH, ATGCH, RFD1, ATRIBA1	EC_3.5 hydrolase acting on carbon-nitrogen bond, other...	0.02	OrthoFinder output from all 47 species
Als_g39205	GCH, ATGCH, RFD1, ATRIBA1	EC_3.5 hydrolase acting on carbon-nitrogen bond, other...	0.03	OrthoFinder output from all 47 species
Aop_g19776	GCH, ATGCH, RFD1, ATRIBA1	EC_3.5 hydrolase acting on carbon-nitrogen bond, other...	0.02	OrthoFinder output from all 47 species
Azfi_s0021.g015739	GCH, ATGCH, RFD1, ATRIBA1	EC_3.5 hydrolase acting on carbon-nitrogen bond, other...	0.02	OrthoFinder output from all 47 species
Ceric.24G065700.1	GCH, ATGCH,...	EC_3.5 hydrolase acting on carbon-nitrogen bond, other...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000241.57	No alias	Enzyme classification.EC_3 hydrolases.EC_3.5 hydrolase...	0.01	OrthoFinder output from all 47 species
GSVIVT01015676001	GCH, ATGCH, RFD1, ATRIBA1	Coenzyme metabolism.FMN/FAD biosynthesis.bifunctional...	0.07	OrthoFinder output from all 47 species
Gb_08166	GCH, ATGCH, RFD1, ATRIBA1	bifunctional GTP cyclohydrolase II (RibA) and DHBP...	0.02	OrthoFinder output from all 47 species
Gb_15090	GCH, ATGCH, RFD1, ATRIBA1	bifunctional GTP cyclohydrolase II (RibA) and DHBP...	0.03	OrthoFinder output from all 47 species
LOC_Os02g36340.1	GCH, ATGCH,...	bifunctional GTP cyclohydrolase II (RibA) and DHBP...	0.06	OrthoFinder output from all 47 species
Len_g28398	GCH, ATGCH, RFD1, ATRIBA1	EC_3.5 hydrolase acting on carbon-nitrogen bond, other...	0.02	OrthoFinder output from all 47 species
MA_10434618g0010	GCH, ATGCH, RFD1, ATRIBA1	bifunctional GTP cyclohydrolase II (RibA) and DHBP...	0.03	OrthoFinder output from all 47 species
Msp_g20070	GCH, ATGCH, RFD1, ATRIBA1	EC_3.5 hydrolase acting on carbon-nitrogen bond, other...	0.04	OrthoFinder output from all 47 species
Nbi_g09262	GCH, ATGCH, RFD1, ATRIBA1	EC_3.5 hydrolase acting on carbon-nitrogen bond, other...	0.02	OrthoFinder output from all 47 species
Ore_g07401	GCH, ATGCH, RFD1, ATRIBA1	EC_3.5 hydrolase acting on carbon-nitrogen bond, other...	0.03	OrthoFinder output from all 47 species
Pir_g52864	GCH, ATGCH, RFD1, ATRIBA1	EC_3.5 hydrolase acting on carbon-nitrogen bond, other...	0.02	OrthoFinder output from all 47 species
Pnu_g07923	GCH, ATGCH, RFD1, ATRIBA1	EC_3.5 hydrolase acting on carbon-nitrogen bond, other...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0043.g012804	GCH, ATGCH, RFD1, ATRIBA1	EC_3.5 hydrolase acting on carbon-nitrogen bond, other...	0.04	OrthoFinder output from all 47 species
Sam_g38259	No alias	EC_3.5 hydrolase acting on carbon-nitrogen bond, other...	0.03	OrthoFinder output from all 47 species
Solyc01g105560.3.1	GCH, ATGCH,...	bifunctional GTP cyclohydrolase II (RibA) and DHBP...	0.11	OrthoFinder output from all 47 species
Spa_g09143	GCH, ATGCH, RFD1, ATRIBA1	EC_3.5 hydrolase acting on carbon-nitrogen bond, other...	0.02	OrthoFinder output from all 47 species
Spa_g11814	GCH, ATGCH, RFD1, ATRIBA1	EC_3.5 hydrolase acting on carbon-nitrogen bond, other...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003933	GTP cyclohydrolase activity	None	Extended
MF	GO:0003935	GTP cyclohydrolase II activity	IEA	Interproscan
BP	GO:0006766	vitamin metabolic process	None	Extended
BP	GO:0006767	water-soluble vitamin metabolic process	None	Extended
BP	GO:0006771	riboflavin metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008686	3,4-dihydroxy-2-butanone-4-phosphate synthase activity	IEA	Interproscan
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009110	vitamin biosynthetic process	None	Extended
BP	GO:0009231	riboflavin biosynthetic process	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	None	Extended
MF	GO:0016814	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines	None	Extended
MF	GO:0016829	lyase activity	None	Extended
MF	GO:0016830	carbon-carbon lyase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
MF	GO:0019238	cyclohydrolase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0042364	water-soluble vitamin biosynthetic process	None	Extended
BP	GO:0042726	flavin-containing compound metabolic process	None	Extended
BP	GO:0042727	flavin-containing compound biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000151	ubiquitin ligase complex	IEP	HCCA
MF	GO:0003700	DNA-binding transcription factor activity	IEP	HCCA
MF	GO:0003849	3-deoxy-7-phosphoheptulonate synthase activity	IEP	HCCA
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	HCCA
MF	GO:0004888	transmembrane signaling receptor activity	IEP	HCCA
MF	GO:0004970	ionotropic glutamate receptor activity	IEP	HCCA
MF	GO:0005216	monoatomic ion channel activity	IEP	HCCA
MF	GO:0005230	extracellular ligand-gated monoatomic ion channel activity	IEP	HCCA
MF	GO:0005231	excitatory extracellular ligand-gated monoatomic ion channel activity	IEP	HCCA
MF	GO:0005234	extracellularly glutamate-gated ion channel activity	IEP	HCCA
CC	GO:0005575	cellular_component	IEP	HCCA
BP	GO:0006855	xenobiotic transmembrane transport	IEP	HCCA
BP	GO:0008037	cell recognition	IEP	HCCA
MF	GO:0008066	glutamate receptor activity	IEP	HCCA
BP	GO:0009072	aromatic amino acid metabolic process	IEP	HCCA
BP	GO:0009073	aromatic amino acid family biosynthetic process	IEP	HCCA
MF	GO:0015276	ligand-gated monoatomic ion channel activity	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
BP	GO:0016567	protein ubiquitination	IEP	HCCA
MF	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups	IEP	HCCA
MF	GO:0019787	ubiquitin-like protein transferase activity	IEP	HCCA
MF	GO:0022824	transmitter-gated monoatomic ion channel activity	IEP	HCCA
MF	GO:0022834	ligand-gated channel activity	IEP	HCCA
MF	GO:0022835	transmitter-gated channel activity	IEP	HCCA
MF	GO:0022836	gated channel activity	IEP	HCCA
MF	GO:0022839	monoatomic ion gated channel activity	IEP	HCCA
MF	GO:0022857	transmembrane transporter activity	IEP	HCCA
CC	GO:0030288	outer membrane-bounded periplasmic space	IEP	HCCA
MF	GO:0030594	neurotransmitter receptor activity	IEP	HCCA
BP	GO:0032446	protein modification by small protein conjugation	IEP	HCCA
MF	GO:0033926	glycopeptide alpha-N-acetylgalactosaminidase activity	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
MF	GO:0038023	signaling receptor activity	IEP	HCCA
CC	GO:0042597	periplasmic space	IEP	HCCA
BP	GO:0042908	xenobiotic transport	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
MF	GO:0043565	sequence-specific DNA binding	IEP	HCCA
MF	GO:0046983	protein dimerization activity	IEP	HCCA
BP	GO:0048544	recognition of pollen	IEP	HCCA
MF	GO:0060089	molecular transducer activity	IEP	HCCA
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	HCCA
MF	GO:0140096	catalytic activity, acting on a protein	IEP	HCCA
MF	GO:0140103	catalytic activity, acting on a glycoprotein	IEP	HCCA
MF	GO:0140110	transcription regulator activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000422	DHBP_synthase_RibB	137	333
IPR000926	RibA	340	509

External Links

No external refs found!

AMTR_s00008p00210700 (GCH, ATGCH, RFD1,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation