AMTR_s00004p00097520 (EMB251, RFC3, EMB161,...)


Aliases : EMB251, RFC3, EMB161, EMB2775, evm_27.TU.AmTr_v1.0_scaffold00004.79

Description : Cell cycle.interphase.DNA replication.elongation.DNA-tracking platform.PCNA sliding clamp loader complex.RFC3 component


Gene families : OG0003475 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003475_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00004p00097520

Target Alias Description ECC score Gene Family Method Actions
Azfi_s1584.g104475 EMB251, RFC3,... component *(RFC3) of PCNA sliding clamp loader complex &... 0.02 OrthoFinder output from all 47 species
Cre16.g679950 EMB251, RFC3,... Cell cycle.interphase.DNA... 0.02 OrthoFinder output from all 47 species
GSVIVT01022436001 EMB251, RFC3,... Cell cycle.interphase.DNA... 0.03 OrthoFinder output from all 47 species
LOC_Os03g57870.1 EMB251, RFC3,... component RFC3 of PCNA sliding clamp loader complex 0.02 OrthoFinder output from all 47 species
MA_10426511g0010 EMB251, RFC3,... Replication factor C subunit 3 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Smo121188 EMB251, RFC3,... Cell cycle.interphase.DNA... 0.03 OrthoFinder output from all 47 species
Solyc01g020440.3.1 EMB251, RFC3,... component RFC3 of PCNA sliding clamp loader complex 0.04 OrthoFinder output from all 47 species
Zm00001e005947_P001 EMB251, RFC3,... component RFC3 of PCNA sliding clamp loader complex 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
CC GO:0005741 mitochondrial outer membrane IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0015299 obsolete solute:proton antiporter activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016073 snRNA metabolic process IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
MF GO:0030515 snoRNA binding IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
BP GO:0031120 snRNA pseudouridine synthesis IEP HCCA
CC GO:0031966 mitochondrial membrane IEP HCCA
CC GO:0031968 organelle outer membrane IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0040031 snRNA modification IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR013748 Rep_factorC_C 252 337
No external refs found!