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  5. AMTR_s00002p00267210

AMTR_s00002p00267210 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00002.521

No description available


Gene families : OG0003141 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003141_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00002p00267210

Target Alias Description ECC score Gene Family Method Actions
Als_g00705 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene62660.t1 Aspi01Gene62660 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.23G060600.1 Ceric.23G060600 not classified & original description: pacid=50610138... 0.03 OrthoFinder output from all 47 species
Cre10.g452600 No alias No description available 0.02 OrthoFinder output from all 47 species
Nbi_g11907 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g15429 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g47180 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0206.g025776 No alias not classified & original description: CDS=1-768 0.03 OrthoFinder output from all 47 species
Sam_g28462 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g49913 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e003537_P001 Zm00001e003537 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004827 proline-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006433 prolyl-tRNA aminoacylation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR019310 Efg1 42 155
No external refs found!