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  5. AMTR_s00001p00107630

AMTR_s00001p00107630 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00001.74

Description : Cytoskeleton.actin and tubulin folding.CCT chaperonin folding complex.CCT7 eta subunit


Gene families : OG0006075 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006075_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00001p00107630

Target Alias Description ECC score Gene Family Method Actions
Adi_g113191 No alias subunit eta *(CCT7) of CCT chaperonin folding complex &... 0.03 OrthoFinder output from all 47 species
Aob_g03439 No alias subunit eta *(CCT7) of CCT chaperonin folding complex &... 0.03 OrthoFinder output from all 47 species
Azfi_s0054.g033787 No alias subunit eta *(CCT7) of CCT chaperonin folding complex &... 0.04 OrthoFinder output from all 47 species
Ceric.05G016500.1 Ceric.05G016500 subunit eta *(CCT7) of CCT chaperonin folding complex &... 0.07 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001371.8 No alias Cytoskeleton.actin and tubulin folding.CCT chaperonin... 0.03 OrthoFinder output from all 47 species
Cre01.g026550 No alias Cytoskeleton.actin and tubulin folding.CCT chaperonin... 0.03 OrthoFinder output from all 47 species
Dac_g09536 No alias subunit eta *(CCT7) of CCT chaperonin folding complex &... 0.03 OrthoFinder output from all 47 species
Dcu_g14177 No alias subunit eta *(CCT7) of CCT chaperonin folding complex &... 0.05 OrthoFinder output from all 47 species
Len_g04756 No alias subunit eta *(CCT7) of CCT chaperonin folding complex &... 0.02 OrthoFinder output from all 47 species
Lfl_g17138 No alias subunit eta *(CCT7) of CCT chaperonin folding complex &... 0.03 OrthoFinder output from all 47 species
MA_20110g0010 No alias CCT7 subunit eta of CCT chaperonin folding complex 0.06 OrthoFinder output from all 47 species
Mp7g09680.1 No alias CCT7 subunit eta of CCT chaperonin folding complex 0.03 OrthoFinder output from all 47 species
Ppi_g06900 No alias subunit eta *(CCT7) of CCT chaperonin folding complex &... 0.03 OrthoFinder output from all 47 species
Sam_g18786 No alias subunit eta *(CCT7) of CCT chaperonin folding complex &... 0.02 OrthoFinder output from all 47 species
Smo168086 No alias Cytoskeleton.actin and tubulin folding.CCT chaperonin... 0.07 OrthoFinder output from all 47 species
Solyc06g065520.3.1 Solyc06g065520 CCT7 subunit eta of CCT chaperonin folding complex 0.06 OrthoFinder output from all 47 species
Tin_g01076 No alias subunit eta *(CCT7) of CCT chaperonin folding complex &... 0.02 OrthoFinder output from all 47 species
Zm00001e025196_P001 Zm00001e025196 CCT7 subunit eta of CCT chaperonin folding complex 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP HCCA
MF GO:0004143 diacylglycerol kinase activity IEP HCCA
CC GO:0005694 chromosome IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0007186 G protein-coupled receptor signaling pathway IEP HCCA
BP GO:0007205 protein kinase C-activating G protein-coupled receptor signaling pathway IEP HCCA
BP GO:0008037 cell recognition IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0048544 recognition of pollen IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002423 Cpn60/GroEL/TCP-1 36 528
No external refs found!