Aliases : VCS
Description : scaffold component *(VCS) of mRNA decapping complex & original description: none
Gene families : OG0001030 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001030_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00061p00131900 | VCS,... | RNA processing.RNA decay.deadenylation-dependent... | 0.03 | OrthoFinder output from all 47 species | |
AT3G13300 | VCS | Transducin/WD40 repeat-like superfamily protein | 0.1 | OrthoFinder output from all 47 species | |
Adi_g055830 | VCS | scaffold component *(VCS) of mRNA decapping complex &... | 0.04 | OrthoFinder output from all 47 species | |
Als_g63425 | VCR | scaffold component *(VCS) of mRNA decapping complex &... | 0.03 | OrthoFinder output from all 47 species | |
Aob_g04505 | VCS | scaffold component *(VCS) of mRNA decapping complex &... | 0.02 | OrthoFinder output from all 47 species | |
Azfi_s0049.g030776 | VCS | scaffold component *(VCS) of mRNA decapping complex &... | 0.04 | OrthoFinder output from all 47 species | |
Cba_g27245 | VCS | scaffold component *(VCS) of mRNA decapping complex &... | 0.03 | OrthoFinder output from all 47 species | |
Cba_g74923 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Ceric.33G025800.1 | VCS, Ceric.33G025800 | scaffold component *(VCS) of mRNA decapping complex &... | 0.03 | OrthoFinder output from all 47 species | |
Dcu_g05835 | VCS | scaffold component *(VCS) of mRNA decapping complex &... | 0.04 | OrthoFinder output from all 47 species | |
Dcu_g11716 | VCS | scaffold component *(VCS) of mRNA decapping complex &... | 0.06 | OrthoFinder output from all 47 species | |
GSVIVT01006976001 | VCS | RNA processing.RNA decay.deadenylation-dependent... | 0.02 | OrthoFinder output from all 47 species | |
GSVIVT01014783001 | VCS | RNA processing.RNA decay.deadenylation-dependent... | 0.05 | OrthoFinder output from all 47 species | |
Gb_04906 | VCS | scaffold component VCS of mRNA decapping complex | 0.03 | OrthoFinder output from all 47 species | |
LOC_Os06g19660.1 | VCS, LOC_Os06g19660 | scaffold component VCS of mRNA decapping complex | 0.04 | OrthoFinder output from all 47 species | |
Len_g08328 | VCS | scaffold component *(VCS) of mRNA decapping complex &... | 0.06 | OrthoFinder output from all 47 species | |
Len_g25353 | VCS | scaffold component *(VCS) of mRNA decapping complex &... | 0.03 | OrthoFinder output from all 47 species | |
Lfl_g18274 | VCS | scaffold component *(VCS) of mRNA decapping complex &... | 0.05 | OrthoFinder output from all 47 species | |
MA_10431534g0010 | VCR | Varicose-related protein OS=Arabidopsis thaliana... | 0.02 | OrthoFinder output from all 47 species | |
MA_10431534g0020 | VCS | Enhancer of mRNA-decapping protein 4 OS=Arabidopsis... | 0.05 | OrthoFinder output from all 47 species | |
MA_10431534g0030 | VCS | scaffold component VCS of mRNA decapping complex | 0.03 | OrthoFinder output from all 47 species | |
MA_39123g0010 | VCS | Enhancer of mRNA-decapping protein 4 OS=Arabidopsis... | 0.03 | OrthoFinder output from all 47 species | |
Mp3g11710.1 | VCS | scaffold component VCS of mRNA decapping complex | 0.02 | OrthoFinder output from all 47 species | |
Msp_g14526 | VCS | scaffold component *(VCS) of mRNA decapping complex &... | 0.03 | OrthoFinder output from all 47 species | |
Msp_g26178 | VCR | scaffold component *(VCS) of mRNA decapping complex &... | 0.05 | OrthoFinder output from all 47 species | |
Nbi_g03858 | VCS | scaffold component *(VCS) of mRNA decapping complex &... | 0.04 | OrthoFinder output from all 47 species | |
Ore_g09332 | VCS | scaffold component *(VCS) of mRNA decapping complex &... | 0.05 | OrthoFinder output from all 47 species | |
Ore_g36602 | VCS | scaffold component *(VCS) of mRNA decapping complex &... | 0.04 | OrthoFinder output from all 47 species | |
Pir_g25441 | VCS | scaffold component *(VCS) of mRNA decapping complex &... | 0.04 | OrthoFinder output from all 47 species | |
Ppi_g03283 | VCS | scaffold component *(VCS) of mRNA decaPping complex &... | 0.03 | OrthoFinder output from all 47 species | |
Ppi_g10110 | VCS | scaffold component *(VCS) of mRNA decaPping complex &... | 0.02 | OrthoFinder output from all 47 species | |
Sam_g51656 | No alias | scaffold component *(VCS) of mRNA decapping complex &... | 0.02 | OrthoFinder output from all 47 species | |
Solyc07g065950.4.1 | VCS, Solyc07g065950 | scaffold component VCS of mRNA decapping complex | 0.02 | OrthoFinder output from all 47 species | |
Solyc10g005920.4.1 | VCS, Solyc10g005920 | scaffold component VCS of mRNA decapping complex | 0.03 | OrthoFinder output from all 47 species | |
Spa_g10517 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
Spa_g17551 | VCS | scaffold component *(VCS) of mRNA decapping complex &... | 0.04 | OrthoFinder output from all 47 species | |
Spa_g37076 | VCR | not classified & original description: none | 0.08 | OrthoFinder output from all 47 species | |
Zm00001e015689_P001 | VCS, Zm00001e015689 | scaffold component VCS of mRNA decapping complex | 0.04 | OrthoFinder output from all 47 species | |
Zm00001e023399_P003 | VCS, Zm00001e023399 | scaffold component VCS of mRNA decapping complex | 0.02 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000184 | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | IEP | HCCA |
BP | GO:0000956 | nuclear-transcribed mRNA catabolic process | IEP | HCCA |
MF | GO:0003724 | RNA helicase activity | IEP | HCCA |
MF | GO:0003743 | translation initiation factor activity | IEP | HCCA |
MF | GO:0003924 | GTPase activity | IEP | HCCA |
MF | GO:0004386 | helicase activity | IEP | HCCA |
MF | GO:0004843 | cysteine-type deubiquitinase activity | IEP | HCCA |
CC | GO:0005737 | cytoplasm | IEP | HCCA |
CC | GO:0005852 | eukaryotic translation initiation factor 3 complex | IEP | HCCA |
BP | GO:0006401 | RNA catabolic process | IEP | HCCA |
BP | GO:0006402 | mRNA catabolic process | IEP | HCCA |
BP | GO:0006413 | translational initiation | IEP | HCCA |
BP | GO:0006886 | intracellular protein transport | IEP | HCCA |
BP | GO:0008104 | protein localization | IEP | HCCA |
MF | GO:0008135 | translation factor activity, RNA binding | IEP | HCCA |
MF | GO:0008186 | ATP-dependent activity, acting on RNA | IEP | HCCA |
MF | GO:0008234 | cysteine-type peptidase activity | IEP | HCCA |
BP | GO:0009057 | macromolecule catabolic process | IEP | HCCA |
BP | GO:0009892 | negative regulation of metabolic process | IEP | HCCA |
BP | GO:0010605 | negative regulation of macromolecule metabolic process | IEP | HCCA |
BP | GO:0010629 | negative regulation of gene expression | IEP | HCCA |
BP | GO:0015031 | protein transport | IEP | HCCA |
BP | GO:0016071 | mRNA metabolic process | IEP | HCCA |
BP | GO:0016579 | protein deubiquitination | IEP | HCCA |
MF | GO:0016787 | hydrolase activity | IEP | HCCA |
BP | GO:0019439 | aromatic compound catabolic process | IEP | HCCA |
MF | GO:0019783 | ubiquitin-like protein peptidase activity | IEP | HCCA |
MF | GO:0019899 | enzyme binding | IEP | HCCA |
MF | GO:0031267 | small GTPase binding | IEP | HCCA |
MF | GO:0031369 | translation initiation factor binding | IEP | HCCA |
BP | GO:0033036 | macromolecule localization | IEP | HCCA |
BP | GO:0034655 | nucleobase-containing compound catabolic process | IEP | HCCA |
BP | GO:0044248 | cellular catabolic process | IEP | HCCA |
BP | GO:0044265 | cellular macromolecule catabolic process | IEP | HCCA |
BP | GO:0044270 | cellular nitrogen compound catabolic process | IEP | HCCA |
MF | GO:0045182 | translation regulator activity | IEP | HCCA |
BP | GO:0045184 | establishment of protein localization | IEP | HCCA |
BP | GO:0046700 | heterocycle catabolic process | IEP | HCCA |
BP | GO:0046907 | intracellular transport | IEP | HCCA |
BP | GO:0048519 | negative regulation of biological process | IEP | HCCA |
MF | GO:0051020 | GTPase binding | IEP | HCCA |
BP | GO:0051649 | establishment of localization in cell | IEP | HCCA |
BP | GO:0070646 | protein modification by small protein removal | IEP | HCCA |
BP | GO:0070647 | protein modification by small protein conjugation or removal | IEP | HCCA |
BP | GO:0070727 | cellular macromolecule localization | IEP | HCCA |
BP | GO:0071702 | organic substance transport | IEP | HCCA |
BP | GO:0071705 | nitrogen compound transport | IEP | HCCA |
MF | GO:0090079 | translation regulator activity, nucleic acid binding | IEP | HCCA |
MF | GO:0101005 | deubiquitinase activity | IEP | HCCA |
MF | GO:0140098 | catalytic activity, acting on RNA | IEP | HCCA |
BP | GO:1901361 | organic cyclic compound catabolic process | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR032401 | EDC4_WD40 | 249 | 562 |
No external refs found! |