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  5. Dac_g16350

Dac_g16350 (RecQl3, ATRECQ3)


Aliases : RecQl3, ATRECQ3

Description : not classified & original description: none


Gene families : OG0000844 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000844_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dac_g16350
Cluster HCCA: Cluster_154

Target Alias Description ECC score Gene Family Method Actions
AT4G35740 RecQl3, ATRECQ3 DEAD/DEAH box RNA helicase family protein 0.04 OrthoFinder output from all 47 species
Ala_g10518 MED34, ATRECQ2, RECQL2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g01082 MED34, ATRECQ2, RECQL2 component *(MED34) of MEDIATOR transcription... 0.03 OrthoFinder output from all 47 species
Azfi_s0171.g055698 RecQl3, ATRECQ3 not classified & original description: CDS=1-1707 0.03 OrthoFinder output from all 47 species
Dde_g43590 MED34, ATRECQ2, RECQL2 component *(MED34) of MEDIATOR transcription... 0.04 OrthoFinder output from all 47 species
Lfl_g31337 RECQI1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g48732 RecQl3, ATRECQ3 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g50849 No alias component *(MED34) of MEDIATOR transcription... 0.02 OrthoFinder output from all 47 species
Smo41328 RecQl3, ATRECQ3 ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Solyc08g074600.4.1 MED34, ATRECQ2,... component MED34 of MEDIATOR transcription co-activator complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000469 cleavage involved in rRNA processing IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0042393 histone binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP HCCA
BP GO:0090501 RNA phosphodiester bond hydrolysis IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 46 211
IPR001650 Helicase_C 252 355
IPR032284 RecQ_Zn-bd 369 440
No external refs found!