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  5. Cre12.g508000

Cre12.g508000 (TIC40, ATTIC40, PDE120)


Aliases : TIC40, ATTIC40, PDE120

Description : Protein translocation.chloroplast.inner envelope TIC translocation system.Tic40 component


Gene families : OG0004334 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004334_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre12.g508000

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00071p00175860 TIC40, ATTIC40,... Protein translocation.chloroplast.inner envelope TIC... 0.03 OrthoFinder output from all 47 species
Azfi_s0109.g045418 TIC40, ATTIC40, PDE120 component *(Tic40) of inner envelope TIC translocation... 0.01 OrthoFinder output from all 47 species
Ceric.35G014600.1 TIC40, ATTIC40,... component *(Tic40) of inner envelope TIC translocation... 0.03 OrthoFinder output from all 47 species
LOC_Os04g35900.1 TIC40, ATTIC40,... component Tic40 of inner envelope TIC translocation system 0.03 OrthoFinder output from all 47 species
Len_g12504 TIC40, ATTIC40, PDE120 component *(Tic40) of inner envelope TIC translocation... 0.04 OrthoFinder output from all 47 species
MA_10433034g0010 TIC40, ATTIC40, PDE120 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp3g00830.1 TIC40, ATTIC40, PDE120 component Tic40 of inner envelope TIC translocation system 0.05 OrthoFinder output from all 47 species
Nbi_g01024 TIC40, ATTIC40, PDE120 component *(Tic40) of inner envelope TIC translocation... 0.02 OrthoFinder output from all 47 species
Ore_g25748 TIC40, ATTIC40, PDE120 component *(Tic40) of inner envelope TIC translocation... 0.03 OrthoFinder output from all 47 species
Pir_g16159 TIC40, ATTIC40, PDE120 component *(Tic40) of inner envelope TIC translocation... 0.02 OrthoFinder output from all 47 species
Sam_g05969 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Sam_g17913 No alias component *(Tic40) of inner envelope TIC translocation... 0.02 OrthoFinder output from all 47 species
Smo437721 TIC40, ATTIC40, PDE120 Protein translocation.chloroplast.inner envelope TIC... 0.02 OrthoFinder output from all 47 species
Solyc11g020300.2.1 TIC40, ATTIC40,... component Tic40 of inner envelope TIC translocation system 0.05 OrthoFinder output from all 47 species
Spa_g08190 TIC40, ATTIC40, PDE120 component *(Tic40) of inner envelope TIC translocation... 0.03 OrthoFinder output from all 47 species
Spa_g18919 TIC40, ATTIC40, PDE120 component *(Tic40) of inner envelope TIC translocation... 0.03 OrthoFinder output from all 47 species
Zm00001e008048_P001 TIC40, ATTIC40,... component Tic40 of inner envelope TIC translocation system 0.08 OrthoFinder output from all 47 species
Zm00001e040911_P002 TIC40, ATTIC40,... component Tic40 of inner envelope TIC translocation system 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006553 lysine metabolic process IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
MF GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase IEP HCCA
BP GO:0009066 aspartate family amino acid metabolic process IEP HCCA
BP GO:0009067 aspartate family amino acid biosynthetic process IEP HCCA
BP GO:0009085 lysine biosynthetic process IEP HCCA
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0043648 dicarboxylic acid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:0046451 diaminopimelate metabolic process IEP HCCA
MF GO:0050661 NADP binding IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
MF GO:0070402 NADPH binding IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!