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  5. GSVIVT01037632001

GSVIVT01037632001


No description available


Gene families : OG0004656 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004656_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01037632001
Cluster HCCA: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00062p00165700 evm_27.TU.AmTr_v1... No description available 0.05 OrthoFinder output from all 47 species
AT4G27010 No alias CONTAINS InterPro DOMAIN/s: Ribosome 60S biogenesis... 0.17 OrthoFinder output from all 47 species
Adi_g117168 No alias transposon-derived factor HDP1 & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g29407 No alias transposon-derived factor HDP1 & original description: none 0.03 OrthoFinder output from all 47 species
Als_g50541 No alias transposon-derived factor HDP1 & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g25180 No alias transposon-derived factor HDP1 & original description: none 0.03 OrthoFinder output from all 47 species
Cre02.g074300 No alias No description available 0.02 OrthoFinder output from all 47 species
Dcu_g15931 No alias transposon-derived factor HDP1 & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g25237 No alias transposon-derived factor HDP1 & original description: none 0.03 OrthoFinder output from all 47 species
Gb_10022 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os04g53380.1 LOC_Os04g53380 no hits & (original description: none) 0.11 OrthoFinder output from all 47 species
MA_650948g0010 No alias no hits & (original description: none) 0.09 OrthoFinder output from all 47 species
MA_84396g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_9824477g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Mp2g07950.1 No alias no hits & (original description: none) 0.11 OrthoFinder output from all 47 species
Smo442019 No alias No description available 0.03 OrthoFinder output from all 47 species
Solyc02g065500.4.1 Solyc02g065500 no hits & (original description: none) 0.12 OrthoFinder output from all 47 species
Spa_g06998 No alias transposon-derived factor HDP1 & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e006881_P003 Zm00001e006881 no hits & (original description: none) 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0002097 tRNA wobble base modification IEP HCCA
BP GO:0002098 tRNA wobble uridine modification IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
CC GO:0033588 elongator holoenzyme complex IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR032436 NopRA1_C 1895 2165
IPR021714 Npa1_N 176 340
IPR021714 Npa1_N 103 173
No external refs found!