GSVIVT01032546001 (MMP)

Aliases : MMP

Description : Protein degradation.peptidase families.metallopeptidase activities.Matrixin-type metalloprotease

Gene families : OG0002614 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002614_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01032546001
Cluster	HCCA: Cluster_20

Target	Alias	Description	ECC score	Gene Family Method
AT1G59970	No alias	Matrixin family protein	0.05	OrthoFinder output from all 47 species
AT1G70170	MMP	matrix metalloproteinase	0.05	OrthoFinder output from all 47 species
Ehy_g30544	No alias	EC_3.4 hydrolase acting on peptide bond (peptidase) &...	0.03	OrthoFinder output from all 47 species
GSVIVT01032544001	No alias	Protein degradation.peptidase families.metallopeptidase...	0.05	OrthoFinder output from all 47 species
Spa_g49383	MMP	EC_3.4 hydrolase acting on peptide bond (peptidase) &...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004175	endopeptidase activity	None	Extended
MF	GO:0004222	metalloendopeptidase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006508	proteolysis	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008233	peptidase activity	None	Extended
MF	GO:0008237	metallopeptidase activity	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
MF	GO:0016787	hydrolase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0030312	external encapsulating structure	None	Extended
CC	GO:0031012	extracellular matrix	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004252	serine-type endopeptidase activity	IEP	HCCA
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	HCCA
MF	GO:0008236	serine-type peptidase activity	IEP	HCCA
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	HCCA
MF	GO:0016846	carbon-sulfur lyase activity	IEP	HCCA
MF	GO:0017171	serine hydrolase activity	IEP	HCCA
MF	GO:0030247	polysaccharide binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002477	Peptidoglycan-bd-like	50	112
IPR001818	Pept_M10_metallopeptidase	168	301

External Links

No external refs found!