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  5. GSVIVT01028300001

GSVIVT01028300001 (EMB1444)


Aliases : EMB1444

Description : Transcription factor EMB1444 OS=Arabidopsis thaliana


Gene families : OG0001070 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001070_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01028300001
Cluster HCCA: Cluster_28

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00030p00176130 LHW,... Transcription factor LHW OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AT1G64625 No alias Serine/threonine-protein kinase WNK (With No Lysine)-related 0.04 OrthoFinder output from all 47 species
Adi_g055836 CPUORF7 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g26633 EMB1444 LHW/LHL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g16081 LHW LHW/LHL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene05034.t1 LHW, Aspi01Gene05034 LHW/LHL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene05034.t2 LHW, Aspi01Gene05034 LHW/LHL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g08974 LHW LHW/LHL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g03494 LHW LHW/LHL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g01539 LHW LHW/LHL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g11990 EMB1444 LHW/LHL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os02g45170.1 LHW, LOC_Os02g45170 Transcription factor LHW OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
LOC_Os07g01130.1 EMB1444, LOC_Os07g01130 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
LOC_Os11g06010.1 LHW, LOC_Os11g06010 Transcription factor LHW OS=Arabidopsis thaliana... 0.01 OrthoFinder output from all 47 species
Msp_g24642 LHW LHW/LHL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g24219 CPUORF7 LHW/LHL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g40326 LHW LHW/LHL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g27140 LHW LHW/LHL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0104.g020053 LHW LHW/LHL-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Sam_g27236 No alias LHW/LHL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Solyc09g066280.4.1 EMB1444, Solyc09g066280 Transcription factor EMB1444 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Spa_g18097 LHW LHW/LHL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e009089_P003 LHW, Zm00001e009089 Transcription factor LHW OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Zm00001e015411_P002 LHW, Zm00001e015411 Transcription factor LHW OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Zm00001e024625_P002 LHW, Zm00001e024625 Transcription factor LHW OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
Zm00001e032637_P002 LHW, Zm00001e032637 transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
Zm00001e039416_P001 LHW, Zm00001e039416 Transcription factor LHW OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005506 iron ion binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0020037 heme binding IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0043169 cation binding IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR025610 MYC/MYB_N 30 191
No external refs found!