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  5. GSVIVT01024119001

GSVIVT01024119001 (MRL1)


Aliases : MRL1

Description : Pentatricopeptide repeat-containing protein MRL1, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0004421 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004421_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01024119001

Target Alias Description ECC score Gene Family Method Actions
AT4G34830 MRL1 Pentatricopeptide repeat (PPR) superfamily protein 0.11 OrthoFinder output from all 47 species
Adi_g019868 MRL1 rbcL-mRNA stability factor *(MRL1) & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g07991 MRL1 rbcL-mRNA stability factor *(MRL1) & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g16036 MRL1 rbcL-mRNA stability factor *(MRL1) & original description: none 0.05 OrthoFinder output from all 47 species
Als_g02579 MRL1 rbcL-mRNA stability factor *(MRL1) & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g03622 MRL1 rbcL-mRNA stability factor *(MRL1) & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g11874 MRL1 rbcL-mRNA stability factor *(MRL1) & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene25379.t1 MRL1, Aspi01Gene25379 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g02698 MRL1 rbcL-mRNA stability factor *(MRL1) & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.28G061200.1 Ceric.28G061200 rbcL-mRNA stability factor *(MRL1) & original... 0.06 OrthoFinder output from all 47 species
Dcu_g03176 MRL1 rbcL-mRNA stability factor *(MRL1) & original description: none 0.06 OrthoFinder output from all 47 species
Dde_g21513 MRL1 rbcL-mRNA stability factor *(MRL1) & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g10337 MRL1 rbcL-mRNA stability factor *(MRL1) & original description: none 0.07 OrthoFinder output from all 47 species
Gb_33501 MRL1 Pentatricopeptide repeat-containing protein MRL1,... 0.08 OrthoFinder output from all 47 species
LOC_Os10g10170.1 MRL1, LOC_Os10g10170 Pentatricopeptide repeat-containing protein MRL1,... 0.09 OrthoFinder output from all 47 species
Lfl_g02395 MRL1 rbcL-mRNA stability factor *(MRL1) & original description: none 0.06 OrthoFinder output from all 47 species
MA_10429571g0010 MRL1 Pentatricopeptide repeat-containing protein MRL1,... 0.03 OrthoFinder output from all 47 species
MA_122602g0010 MRL1 Pentatricopeptide repeat-containing protein MRL1,... 0.03 OrthoFinder output from all 47 species
Mp3g17160.1 MRL1 Pentatricopeptide repeat-containing protein MRL1,... 0.05 OrthoFinder output from all 47 species
Nbi_g03133 MRL1 rbcL-mRNA stability factor *(MRL1) & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g08612 MRL1 rbcL-mRNA stability factor *(MRL1) & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g40966 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g17500 MRL1 rbcL-mRNA stability factor *(MRL1) & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g08167 MRL1 rbcL-mRNA stability factor *(MRL1) & original description: none 0.06 OrthoFinder output from all 47 species
Ppi_g02350 MRL1 rbcL-mRNA stability factor *(MRL1) & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0008.g003951 No alias rbcL-mRNA stability factor *(MRL1) & original... 0.06 OrthoFinder output from all 47 species
Smo115078 MRL1 Pentatricopeptide repeat-containing protein MRL1,... 0.03 OrthoFinder output from all 47 species
Smo169254 MRL1 Pentatricopeptide repeat-containing protein MRL1,... 0.06 OrthoFinder output from all 47 species
Solyc01g111020.3.1 MRL1, Solyc01g111020 Pentatricopeptide repeat-containing protein MRL1,... 0.14 OrthoFinder output from all 47 species
Spa_g01352 MRL1 rbcL-mRNA stability factor *(MRL1) & original description: none 0.07 OrthoFinder output from all 47 species
Tin_g02143 MRL1 rbcL-mRNA stability factor *(MRL1) & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e002719_P003 MRL1, Zm00001e002719 Pentatricopeptide repeat-containing protein MRL1,... 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006553 lysine metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
MF GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase IEP HCCA
BP GO:0009066 aspartate family amino acid metabolic process IEP HCCA
BP GO:0009067 aspartate family amino acid biosynthetic process IEP HCCA
BP GO:0009085 lysine biosynthetic process IEP HCCA
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0043648 dicarboxylic acid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046451 diaminopimelate metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002629 Met_Synth_C/arc 1 48
IPR002885 Pentatricopeptide_repeat 1207 1251
IPR033443 PPR_long 1004 1166
IPR002885 Pentatricopeptide_repeat 1175 1203
IPR002885 Pentatricopeptide_repeat 965 990
No external refs found!