GSVIVT01008079001


No description available


Gene families : OG0003321 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003321_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01008079001
Cluster HCCA: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00086p00132870 evm_27.TU.AmTr_v1... No description available 0.1 OrthoFinder output from all 47 species
AT3G47890 No alias Ubiquitin carboxyl-terminal hydrolase-related protein 0.14 OrthoFinder output from all 47 species
AT3G47910 No alias Ubiquitin carboxyl-terminal hydrolase-related protein 0.18 OrthoFinder output from all 47 species
Adi_g058350 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g080721 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aev_g14795 No alias not classified & original description: none 0.1 OrthoFinder output from all 47 species
Ala_g04590 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Als_g06801 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g18753 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Als_g19280 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g32535 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Aob_g22460 No alias not classified & original description: none 0.1 OrthoFinder output from all 47 species
Aop_g14015 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene09610.t1 Aspi01Gene09610 not classified & original description: none 0.09 OrthoFinder output from all 47 species
Azfi_s0327.g065237 No alias not classified & original description: CDS=1-5397 0.06 OrthoFinder output from all 47 species
Ceric.1Z194000.1 Ceric.1Z194000 not classified & original description: pacid=50618972... 0.1 OrthoFinder output from all 47 species
Cre12.g508250 No alias No description available 0.06 OrthoFinder output from all 47 species
Dac_g28933 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g04153 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Dde_g07008 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Ehy_g16619 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
LOC_Os03g06950.1 LOC_Os03g06950 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Len_g49533 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Lfl_g12618 No alias not classified & original description: none 0.1 OrthoFinder output from all 47 species
MA_46922g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Msp_g13542 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g05015 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g44266 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Ppi_g13760 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0022.g008734 No alias not classified & original description: CDS=269-5383 0.03 OrthoFinder output from all 47 species
Solyc06g071120.3.1 Solyc06g071120 no hits & (original description: none) 0.11 OrthoFinder output from all 47 species
Spa_g25851 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g50989 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g02198 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e039017_P003 Zm00001e039017 no hits & (original description: none) 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0016579 protein deubiquitination IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004674 protein serine/threonine kinase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0009966 regulation of signal transduction IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0010646 regulation of cell communication IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0023051 regulation of signaling IEP HCCA
BP GO:0032012 regulation of ARF protein signal transduction IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046578 regulation of Ras protein signal transduction IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
BP GO:1902531 regulation of intracellular signal transduction IEP HCCA
InterPro domains Description Start Stop
IPR006865 DUF629 288 776
IPR006866 DUF627_N 23 131
IPR001394 Peptidase_C19_UCH 1219 1548
No external refs found!