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  5. GSVIVT01006298001

GSVIVT01006298001


No description available


Gene families : OG0001248 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001248_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01006298001
Cluster HCCA: Cluster_20

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00046p00193590 evm_27.TU.AmTr_v1... No description available 0.04 OrthoFinder output from all 47 species
AT4G37950 No alias Rhamnogalacturonate lyase family protein 0.02 OrthoFinder output from all 47 species
Ala_g21152 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene46069.t1 Aspi01Gene46069 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g18808 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01012710001 No alias No description available 0.04 OrthoFinder output from all 47 species
LOC_Os12g03790.1 LOC_Os12g03790 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_10427585g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp2g13590.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Smo413798 No alias No description available 0.05 OrthoFinder output from all 47 species
Solyc04g076650.2.1 Solyc04g076650 no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
Solyc11g011270.1.1 Solyc11g011270 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Solyc11g011290.3.1 Solyc11g011290 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Solyc11g011300.2.1 Solyc11g011300 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Tin_g04644 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e013992_P006 Zm00001e013992 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0004650 polygalacturonase activity IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0030247 polysaccharide binding IEP HCCA
CC GO:0030312 external encapsulating structure IEP HCCA
CC GO:0031012 extracellular matrix IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR029413 RG-lyase_II 340 413
IPR010325 Rhamnogal_lyase 3 186
IPR029411 RG-lyase_III 426 612
No external refs found!