GSVIVT01001469001

Description : Disease resistance protein RGA2 OS=Solanum bulbocastanum

Gene families : OG0000694 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000694_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01001469001

Target	Alias	Description	ECC score	Gene Family Method
AT3G14470	No alias	NB-ARC domain-containing disease resistance protein	0.04	OrthoFinder output from all 47 species
GSVIVT01001473001	No alias	Putative disease resistance RPP13-like protein 1...	0.04	OrthoFinder output from all 47 species
GSVIVT01022864001	No alias	Putative disease resistance protein At3g14460...	0.03	OrthoFinder output from all 47 species
GSVIVT01023015001	No alias	Putative disease resistance RPP13-like protein 1...	0.05	OrthoFinder output from all 47 species
GSVIVT01027229001	No alias	Putative disease resistance RPP13-like protein 1...	0.03	OrthoFinder output from all 47 species
GSVIVT01027276001	No alias	Putative disease resistance RPP13-like protein 1...	0.03	OrthoFinder output from all 47 species
GSVIVT01032180001	No alias	Putative disease resistance protein RGA4 OS=Solanum bulbocastanum	0.05	OrthoFinder output from all 47 species
GSVIVT01032199001	No alias	Disease resistance protein RGA2 OS=Solanum bulbocastanum	0.04	OrthoFinder output from all 47 species
GSVIVT01036610001	No alias	Putative disease resistance RPP13-like protein 1...	0.04	OrthoFinder output from all 47 species
GSVIVT01038298001	No alias	Putative disease resistance RPP13-like protein 1...	0.03	OrthoFinder output from all 47 species
LOC_Os01g15580.1	LOC_Os01g15580	Putative disease resistance protein RGA1 OS=Solanum...	0.03	OrthoFinder output from all 47 species
LOC_Os04g43340.1	LOC_Os04g43340	Putative disease resistance RPP13-like protein 1...	0.03	OrthoFinder output from all 47 species
LOC_Os06g41480.1	LOC_Os06g41480	Putative disease resistance protein RGA3 OS=Solanum...	0.05	OrthoFinder output from all 47 species
LOC_Os07g17250.1	LOC_Os07g17250	Putative disease resistance protein At3g14460...	0.03	OrthoFinder output from all 47 species
LOC_Os08g42930.1	LOC_Os08g42930	Disease resistance protein RGA2 OS=Solanum bulbocastanum...	0.03	OrthoFinder output from all 47 species
LOC_Os08g43050.1	LOC_Os08g43050	Putative disease resistance protein RGA1 OS=Solanum...	0.04	OrthoFinder output from all 47 species
LOC_Os09g14490.1	LOC_Os09g14490	Putative disease resistance RPP13-like protein 1...	0.03	OrthoFinder output from all 47 species
LOC_Os12g03750.1	LOC_Os12g03750	Disease resistance protein RGA2 OS=Solanum bulbocastanum...	0.03	OrthoFinder output from all 47 species
Solyc08g007630.1.1	Solyc08g007630	Putative disease resistance RPP13-like protein 1...	0.03	OrthoFinder output from all 47 species
Solyc11g068360.1.1	Solyc11g068360	Putative disease resistance RPP13-like protein 1...	0.03	OrthoFinder output from all 47 species
Zm00001e031999_P001	Zm00001e031999	Putative disease resistance protein RGA3 OS=Solanum...	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043531	ADP binding	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003700	DNA-binding transcription factor activity	IEP	HCCA
MF	GO:0003924	GTPase activity	IEP	HCCA
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	HCCA
MF	GO:0005525	GTP binding	IEP	HCCA
BP	GO:0006082	organic acid metabolic process	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006520	amino acid metabolic process	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
MF	GO:0016462	pyrophosphatase activity	IEP	HCCA
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	HCCA
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	HCCA
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	IEP	HCCA
MF	GO:0019001	guanyl nucleotide binding	IEP	HCCA
BP	GO:0019752	carboxylic acid metabolic process	IEP	HCCA
MF	GO:0032561	guanyl ribonucleotide binding	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
BP	GO:0043038	amino acid activation	IEP	HCCA
BP	GO:0043039	tRNA aminoacylation	IEP	HCCA
BP	GO:0043436	oxoacid metabolic process	IEP	HCCA
MF	GO:0043565	sequence-specific DNA binding	IEP	HCCA
MF	GO:0046983	protein dimerization activity	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA
MF	GO:0140110	transcription regulator activity	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002182	NB-ARC	336	410

External Links

No external refs found!

GSVIVT01001469001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation