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  5. Solyc11g033280.2.1

Solyc11g033280.2.1 (EIF4A-III, Solyc11g033280)


Aliases : EIF4A-III, Solyc11g033280

Description : helicase component eIF4A3 of RNA quality control Exon Junction complex


Gene families : OG0000532 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000532_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc11g033280.2.1

Target Alias Description ECC score Gene Family Method Actions
AT1G54270 EIF4A-2 eif4a-2 0.03 OrthoFinder output from all 47 species
AT3G13920 TIF4A1, EIF4A1, RH4 eukaryotic translation initiation factor 4A1 0.02 OrthoFinder output from all 47 species
Als_g05564 EIF4A-2 mRNA unwinding factor *(eIF4A)) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g07229 EIF4A-2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g39617 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g07823 EIF4A-2 mRNA unwinding factor *(eIF4A)) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g03471 EIF4A-2 mRNA unwinding factor *(eIF4A)) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g13177 EIF4A-2 mRNA unwinding factor *(eIF4A)) & original description: none 0.06 OrthoFinder output from all 47 species
Ceric.14G044600.1 EIF4A-2, Ceric.14G044600 mRNA unwinding factor *(eIF4A)) & original description:... 0.04 OrthoFinder output from all 47 species
Cre03.g199647 EIF4A-III RNA processing.RNA quality control Exon Junction complex... 0.03 OrthoFinder output from all 47 species
Dac_g10266 EIF4A-2 mRNA unwinding factor *(eIF4A)) & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01035374001 EIF4A-2 Protein biosynthesis.translation initiation.mRNA... 0.03 OrthoFinder output from all 47 species
GSVIVT01036113001 EIF4A-III Eukaryotic initiation factor 4A-3 OS=Nicotiana plumbaginifolia 0.03 OrthoFinder output from all 47 species
Gb_24110 EIF4A-III helicase component eIF4A3 of RNA quality control Exon... 0.02 OrthoFinder output from all 47 species
Lfl_g04610 No alias mRNA unwinding factor *(eIF4A)) & original description: none 0.02 OrthoFinder output from all 47 species
Mp2g02760.1 EIF4A-2 mRNA unwinding factor (eIF4A) 0.04 OrthoFinder output from all 47 species
Mp4g09540.1 EIF4A-III helicase component eIF4A3 of RNA quality control Exon... 0.05 OrthoFinder output from all 47 species
Nbi_g03558 EIF4A-2 mRNA unwinding factor *(eIF4A)) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g10223 EIF4A-2 mRNA unwinding factor *(eIF4A)) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g20207 EIF4A-2 mRNA unwinding factor *(eIF4A)) & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c7_3770V3.1 EIF4A-2, Pp3c7_3770 eukaryotic translation initiation factor 4A1 0.02 OrthoFinder output from all 47 species
Pp3s93_30V3.1 EIF4A-2, Pp3s93_30 eukaryotic translation initiation factor 4A1 0.02 OrthoFinder output from all 47 species
Ppi_g03000 EIF4A-III helicase component *(eIF4A3) of RNA quality control Exon... 0.02 OrthoFinder output from all 47 species
Sam_g02045 No alias mRNA unwinding factor *(eIF4A)) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g23496 No alias mRNA unwinding factor *(eIF4A)) & original description: none 0.02 OrthoFinder output from all 47 species
Smo164382 EIF4A-III RNA processing.RNA quality control Exon Junction complex... 0.03 OrthoFinder output from all 47 species
Spa_g05950 EIF4A-2 mRNA unwinding factor *(eIF4A)) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e016284_P001 EIF4A-III, Zm00001e016284 helicase component eIF4A3 of RNA quality control Exon... 0.03 OrthoFinder output from all 47 species
Zm00001e030233_P004 EIF4A-2, Zm00001e030233 mRNA unwinding factor (eIF4A) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005047 signal recognition particle binding IEP HCCA
MF GO:0005048 signal sequence binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005786 signal recognition particle, endoplasmic reticulum targeting IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006612 protein targeting to membrane IEP HCCA
BP GO:0006613 cotranslational protein targeting to membrane IEP HCCA
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008312 7S RNA binding IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0030942 endoplasmic reticulum signal peptide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
MF GO:0033218 amide binding IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0042277 peptide binding IEP HCCA
MF GO:0043021 ribonucleoprotein complex binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
BP GO:0045047 protein targeting to ER IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
CC GO:0048500 signal recognition particle IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0051668 localization within membrane IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0070972 protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072657 protein localization to membrane IEP HCCA
BP GO:0090150 establishment of protein localization to membrane IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 262 370
IPR011545 DEAD/DEAH_box_helicase_dom 61 223
No external refs found!